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[178220_at]

Description W08D2.3 /REP_DB=WormBase Gene ID /WP=CE06558 /TR=Q23220 /GB=CAA94232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      4grp_high_8_8 > 17      6grp_total > 02      4grp_total > 31      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 192.6
(3)
P 		66
(-1.9)
A 		36.4
(-3)
A 		185.8
(2.7)
P 		156
B 242.9
(3)
P 		95
(-1.6)
P 		49
(-3)
A 		94.7
(-1.6)
P 		194
C 192.3
(2.4)
P 		79.3
(-2.4)
A 		64.5
(-3)
P 		206.8
(3)
P 		142
avr 209.3
(3) 		80.1
(-1.9) 		50
(-3) 		162.4
(1.2) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 113.7
(1.1)
P 		136.9
(3)
P 		109.7
(0.8)
P 		81.9
(-1.5)
M 		118
(1.4)
P 		64.3
(-3)
A 		73
B 84.1
(-0.5)
P 		86.4
(-0.3)
P 		113.2
(3)
P 		108.4
(2.4)
P 		63.9
(-3)
M 		93.8
(0.6)
P 		49
C 104
(-0.5)
P 		159
(3)
P 		65.5
(-3)
P 		130
(1.1)
A 		97.5
(-0.9)
P 		74.9
(-2.4)
P 		94
avr 100.6
(-0.2) 		127.4
(3) 		96.1
(-0.8) 		106.8
(0.5) 		93.1
(-1.1) 		77.7
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 70.1
(3)
P 		14.3
(-2.5)
A 		9.5
(-3)
A 		27.2
(-1.2)
P 		61
B 77.5
(3)
P 		23.5
(-1.9)
P 		11.4
(-3)
A 		20.2
(-2.2)
P 		66
C 63.7
(3)
P 		22.8
(-3)
A 		22.5
(-3)
P 		34.9
(-1.2)
P 		41
avr 70.4
(3) 		20.2
(-2.4) 		14.5
(-3) 		27.4
(-1.6) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 21
(-2)
P 		48.7
(3)
P 		23.9
(-1.5)
P 		20.8
(-2.1)
M 		35.6
(0.6)
P 		15.7
(-3)
A 		33
B 29.3
(-0.8)
P 		28.8
(-1.1)
P 		27.5
(-2)
P 		28.7
(-1.2)
P 		26
(-3)
M 		35
(3)
P 		9
C 38.5
(1.1)
P 		48.5
(3)
P 		16.7
(-3)
P 		26.1
(-1.2)
A 		31.5
(-0.2)
P 		25.1
(-1.4)
P 		32
avr 29.6
(-0.9) 		42
(3) 		22.7
(-3) 		25.2
(-2.2) 		31
(-0.4) 		25.3
(-2.2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178220_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8402
Sequence Type Exemplar sequence
Representative Public ID W08D2.3 NCBI
Target Description W08D2.3 /REP_DB=WormBase Gene ID /WP=CE06558 /TR=Q23220 /GB=CAA94232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069352(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069352 NCBI Caenorhabditis elegans W08D2.3 (W08D2.3) mRNA, complete cds. 11/11 None
SNAP00000011769 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9806451:9808782:-1 11/11 None
GENEFINDER00000011784 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9806451:9810436:-1 11/11 None
W08D2.3 ENSEMBL cdna:known chromosome:CEL140:IV:9806390:9810436:-1 gene:W08D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9806456-9810442(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W08D2.3
Entrez Gene 189289 Entrez gene
SwissProt Q23220 EMBL-EBI
WormBase CE06558 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6835 dicarboxylic acid transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
17153 sodium:dicarboxylate symporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94232 Hypothetical protein W08D2.3 [Caenorhabditis elegans] ref|NP_501753.1| W08D2.3 [Caenorhabditis elegans] 0.0
blast CAA94232 Hypothetical protein W08D2.3 [Caenorhabditis elegans] ref|NP_501753.1| W08D2.3 [Caenorhabditis elegans] 1.0E-160
blast CAE59985 Hypothetical protein CBG03477 [Caenorhabditis briggsae] 1.0E-103
blast CAE59985 Hypothetical protein CBG03477 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501753.1 10 34-56,71-93,100-117,122-144,156-178,219-236,286-308,355-377,382-404,443-465
W08D2.3 10 34-56,71-93,100-117,122-144,156-178,219-236,286-308,355-377,382-404,443-465
SNAP00000011769 6 7-29,70-87,158-180,190-212,217-239,278-300
GENEFINDER00000011784 10 34-56,71-93,100-117,122-144,156-178,219-236,286-308,355-377,382-404,443-465
Sequence
Target Sequence 
>C. ELEGANS:178220_AT
gtatagcttccgaacaattccttctggttggttcacttatttttggattcttcctggcgc
cacttctacctgcacttgtgatctacataaatcatagcttgtcgctaaaatcaaacaaca
cattcactttactctctggacattgttcaggacacttaatattcccccttctactcactt
tgacaaactcctcgaactcaaggcttttcattgcgttcaactttgttgctattgtcattt
tggtaataattttggtatcaattttgagccttcatgctcaaattgaaaggatgcaagcat
cccaaagtggcctaaatctcttcgtttctcgcttcttatcaggcgaatctcttctcaaac
gtactcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATAGCTTCCGAACAATTCCTTCT 539 453 1136 Antisense
ACAATTCCTTCTGGTTGGTTCACTT 269 115 1149 Antisense
TTATTTTTGGATTCTTCCTGGCGCC 359 677 1172 Antisense
CACTTCTACCTGCACTTGTGATCTA 446 197 1196 Antisense
ACATTCACTTTACTCTCTGGACATT 284 105 1255 Antisense
TCAGGACACTTAATATTCCCCCTTC 254 623 1282 Antisense
GACAAACTCCTCGAACTCAAGGCTT 137 367 1317 Antisense
AAGGCTTTTCATTGCGTTCAACTTT 146 161 1335 Antisense
GATGCAAGCATCCCAAAGTGGCCTA 188 413 1425 Antisense
TTCGTTTCTCGCTTCTTATCAGGCG 292 693 1456 Antisense
GAATCTCTTCTCAAACGTACTCGAT 117 329 1480 Antisense
Sequence Source Affymetrix Proprietary Database