[Home] | [Total List]

[178218_at]

Description K10D6.3 /REP_DB=WormBase Gene ID /WP=CE06177 /TR=Q21421 /GB=CAA98510.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 15
(-0.1)
A 		6
(-2.2)
A 		2.3
(-3)
A 		28.7
(3)
A 		26
B 7.7
(-3)
A 		17.3
(-0.3)
A 		8.2
(-2.9)
A 		29.2
(3)
A 		22
C 22.2
(-2)
A 		5.5
(-3)
A 		13.3
(-2.6)
A 		109.6
(3)
A 		104
avr 15
(-2.1) 		9.6
(-2.8) 		7.9
(-3) 		55.8
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 11.6
(-1.3)
A 		12.9
(-0.9)
A 		24.7
(3)
A 		21.2
(1.9)
A 		21.8
(2)
A 		6.4
(-3)
A 		18
B 26.9
(0.5)
A 		35.9
(1.8)
A 		2.1
(-3)
A 		16.4
(-1)
A 		33
(1.4)
A 		44.3
(3)
A 		42
C 1.8
(-3)
A 		30.5
(2.2)
A 		1.7
(-3)
A 		28
(1.7)
A 		1.6
(-3)
A 		35.1
(3)
A 		34
avr 13.4
(-1.8) 		26.4
(2.3) 		9.5
(-3) 		21.9
(0.9) 		18.8
(-0.1) 		28.6
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 5.5
(3)
A 		1.3
(-2.1)
A 		0.6
(-3)
A 		4.2
(1.4)
A 		5
B 2.5
(-2.2)
A 		4.3
(0.3)
A 		1.9
(-3)
A 		6.2
(3)
A 		4
C 7.4
(-0.9)
A 		1.6
(-3)
A 		4.6
(-1.9)
A 		18.5
(3)
A 		17
avr 5.1
(-0.8) 		2.4
(-3) 		2.4
(-3) 		9.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.1
(-2.4)
A 		4.6
(0.6)
A 		5.4
(1.6)
A 		5.4
(1.6)
A 		6.6
(3)
A 		1.6
(-3)
A 		5
B 9.3
(0.3)
A 		12
(1.3)
A 		0.5
(-3)
A 		4.4
(-1.5)
A 		13.4
(1.8)
A 		16.5
(3)
A 		16
C 0.7
(-2.8)
A 		9.3
(1.7)
A 		0.4
(-3)
A 		5.6
(-0.2)
A 		0.5
(-2.9)
A 		11.7
(3)
A 		11
avr 4
(-1.5) 		8.6
(2) 		2.1
(-3) 		5.1
(-0.7) 		6.8
(0.6) 		9.9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178218_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14646
Sequence Type Exemplar sequence
Representative Public ID K10D6.3 NCBI
Target Description K10D6.3 /REP_DB=WormBase Gene ID /WP=CE06177 /TR=Q21421 /GB=CAA98510.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073444(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073444 NCBI Caenorhabditis elegans K10D6.3 (K10D6.3) mRNA, complete cds. 11/11 None
SNAP00000039398 ENSEMBL cdna:SNAP chromosome:CEL140:V:11203679:11203980:1 11/11 None
GENEFINDER00000039401 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11203523:11203980:1 11/11 None
K10D6.3 ENSEMBL cdna:known chromosome:CEL140:V:11203679:11203980:1 gene:K10D6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11203678-11203980(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D6.3
Entrez Gene 187265 Entrez gene
SwissProt Q21421 EMBL-EBI
WormBase CE06177 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98510 Hypothetical protein K10D6.3 [Caenorhabditis elegans] ref|NP_505845.1| K10D6.3 [Caenorhabditis elegans] 3.0E-31
blast CAA98510 Hypothetical protein K10D6.3 [Caenorhabditis elegans] ref|NP_505845.1| K10D6.3 [Caenorhabditis elegans] 4.0E-31
Sequence
Target Sequence 
>C. ELEGANS:178218_AT
ggaactgctagaattgaagtggtttcggttcccgtcaagccgagaaacaaattttcaacc
acgccggttaagcgtgttgaaatgaagaagagcaaagagtcagattcagtcgataaagct
ctgaaagtgaagtctagcctggattgcatgaaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTGCTAGAATTGAAGTGGTTT 57 531 67 Antisense
TGAAGTGGTTTCGGTTCCCGTCAAG 450 573 81 Antisense
GTTCCCGTCAAGCCGAGAAACAAAT 337 439 94 Antisense
GAGAAACAAATTTTCAACCACGCCG 468 389 108 Antisense
TCAACCACGCCGGTTAAGCGTGTTG 413 629 121 Antisense
GCCGGTTAAGCGTGTTGAAATGAAG 220 259 129 Antisense
GAGCAAAGAGTCAGATTCAGTCGAT 273 391 156 Antisense
AGTCAGATTCAGTCGATAAAGCTCT 72 61 164 Antisense
GATAAAGCTCTGAAAGTGAAGTCTA 556 423 178 Antisense
GTGAAGTCTAGCCTGGATTGCATGA 701 481 193 Antisense
GTCTAGCCTGGATTGCATGAAATTG 102 469 198 Antisense
Sequence Source Affymetrix Proprietary Database