[Home] | [Total List]

[178217_at] 7TM chemoreceptor, sra family

Description F35C5.2 /REP_DB=WormBase Gene ID /WP=CE15942 /TR=Q9XVP3 /GB=CAB03051.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 21      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 42.8
(-0.8)
A 		18.4
(-3)
A 		46.5
(-0.5)
A 		85
(3)
A 		67
B 47.7
(0.1)
A 		66.1
(3)
A 		27.5
(-3)
A 		59
(1.9)
A 		39
C 69.1
(3)
A 		61
(1.9)
A 		51.6
(0.6)
A 		25.7
(-3)
A 		43
avr 53.2
(1.6) 		48.5
(-0.3) 		41.9
(-3) 		56.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 11.7
(-2.9)
A 		74.5
(2.1)
A 		86.1
(3)
A 		10.4
(-3)
A 		10.9
(-3)
A 		30.1
(-1.4)
A 		76
B 13.8
(-1.5)
A 		20
(0)
A 		7.7
(-3)
A 		14.1
(-1.4)
A 		32.3
(3)
A 		15.3
(-1.1)
A 		25
C 13.7
(-3)
A 		41.6
(3)
A 		30.5
(0.6)
A 		14.3
(-2.9)
A 		35.9
(1.8)
A 		26.7
(-0.2)
A 		28
avr 13.1
(-3) 		45.4
(3) 		41.4
(2.3) 		12.9
(-3) 		26.4
(-0.5) 		24
(-1) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 15.6
(3)
A 		4
(-3)
A 		12.1
(1.2)
A 		12.4
(1.3)
A 		12
B 15.2
(2.3)
A 		16.3
(3)
A 		6.4
(-3)
A 		12.6
(0.8)
A 		10
C 22.9
(3)
A 		17.5
(1.3)
A 		18
(1.4)
A 		4.3
(-3)
A 		19
avr 17.9
(3) 		12.6
(-0.9) 		12.2
(-1.2) 		9.8
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.2
(-3)
A 		26.5
(3)
A 		18.8
(1.1)
A 		2.6
(-2.9)
A 		3.3
(-2.7)
A 		7.3
(-1.7)
A 		24
B 4.8
(-1.4)
A 		6.6
(-0.5)
A 		1.9
(-3)
A 		3.7
(-2)
A 		13.1
(3)
A 		5.7
(-1)
A 		11
C 5.1
(-1.7)
A 		12.7
(3)
A 		7.8
(0)
A 		2.9
(-3)
A 		11.6
(2.3)
A 		8.9
(0.7)
A 		10
avr 4
(-2.6) 		15.3
(3) 		9.5
(0.1) 		3.1
(-3) 		9.3
(0) 		7.3
(-0.9) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3706
Sequence Type Exemplar sequence
Representative Public ID F35C5.2 NCBI
Target Description F35C5.2 /REP_DB=WormBase Gene ID /WP=CE15942 /TR=Q9XVP3 /GB=CAB03051.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064337(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064337 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-14) (sra-14) mRNA, complete cds. 9/11 None
GENEFINDER00000007559 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12885173:12888488:1 9/11 None
F35C5.2 ENSEMBL cdna:known chromosome:CEL140:II:12885173:12888456:1 gene:F35C5.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007544 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12885169-12888485(+) 93.12 96.74
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-14
Ensembl F35C5.2
Entrez Gene 185262 Entrez gene
SwissProt Q9XVP3 EMBL-EBI
WormBase CE33390 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03051 Hypothetical protein F35C5.2 [Caenorhabditis elegans] ref|NP_496738.2| Serpentine Receptor, class A (alpha) family member (sra-14) [Caenorhabditis elegans] 1.0E-176
blast CAB03051 Hypothetical protein F35C5.2 [Caenorhabditis elegans] ref|NP_496738.2| Serpentine Receptor, class A (alpha) family member (sra-14) [Caenorhabditis elegans] 1.0E-140
blast CAE71484 Hypothetical protein CBG18403 [Caenorhabditis briggsae] 1.0E-112
blast CAE71484 Hypothetical protein CBG18403 [Caenorhabditis briggsae] 1.0E-93
blast CAE46667 Hypothetical protein F44F4.5b [Caenorhabditis elegans] ref|NP_001022163.1| Serpentine Receptor, class A (alpha) family member (sra-10) [Caenorhabditis elegans] 4.0E-50
blast CAA85456 Hypothetical protein F44F4.5a [Caenorhabditis elegans] ref|NP_001022162.1| Serpentine Receptor, class A (alpha) family member (sra-10) [Caenorhabditis elegans] sp|Q20405|SRA10_CAEEL Serpentine receptor class alpha-10 (Protein sra-10) 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 8.8E-17
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 7.0E-8
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.2E-21
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 1.5E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496738.2 7 20-42,62-84,111-133,146-168,192-214,241-263,278-300
F35C5.2 7 20-42,62-84,111-133,146-168,192-214,241-263,278-300
GENEFINDER00000007559 6 21-43,92-114,127-149,173-195,247-269,279-301
Sequence
Target Sequence 
>C. ELEGANS:178217_AT
aaagcgagaaagactacctgcccagttgtcagttctttcgaaaacaagacgcacccagag
ccaatttatttctcataagcagtctagttttgacaattatcaatcttatggtcaatgtta
cactgcttttcgttaataaaatgcattcaaagcggacccgattcgacgtcgagtttcaat
atcagcgaagtgaggcgatgatgacgtcagagtcgatatcggtgctggtgattgcgcaga
tcagtgcactcgggatttatgcgggtggaagttggctttttcggcaggccaaggatgaga
ttccggtttacttgtatagtaatttgattatatgggtctatgctatttcaggctttattg
agcattttctaaaatatttcggaattgccgcccatccctatatgaataaaaattcgacaa
atgggcaaattgccggcaatctcctacgctaccgtaaccctcccacttctcatcatattc
tgcattcgatatgtaagacggcgccgccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCGAGAAAGACTACCTGCCCAG 600 123 521 Antisense
GCCCAGTTGTCAGTTCTTTCGAAAA 261 287 540 Antisense
GACGCACCCAGAGCCAATTTATTTC 22 381 568 Antisense
GTCAATGTTACACTGCTTTTCGTTA 4 463 631 Antisense
TCAAAGCGGACCCGATTCGACGTCG 367 627 667 Antisense
ATCGGTGCTGGTGATTGCGCAGATC 320 35 738 Antisense
TGCGCAGATCAGTGCACTCGGGATT 58 577 753 Antisense
GTGGAAGTTGGCTTTTTCGGCAGGC 276 491 785 Antisense
GGGTCTATGCTATTTCAGGCTTTAT 91 497 854 Antisense
AATATTTCGGAATTGCCGCCCATCC 232 173 893 Antisense
CGATATGTAAGACGGCGCCGCCAGC 552 247 1007 Antisense
Sequence Source Affymetrix Proprietary Database