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[178216_at]

Description F38H4.5 /REP_DB=WormBase Gene ID /WP=CE10066 /TR=Q20180 /GB=CAB01173.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 10      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 4
(-3)
A 		4.4
(-2.9)
A 		16.7
(-1.2)
A 		46.7
(3)
A 		43
B 20.8
(3)
A 		4.7
(-3)
A 		8.1
(-1.7)
A 		9.1
(-1.4)
A 		16
C 6.2
(-3)
A 		28.3
(3)
A 		7.9
(-2.5)
A 		14.1
(-0.9)
A 		22
avr 10.3
(-3) 		12.5
(-2) 		10.9
(-2.7) 		23.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 7.9
(-3)
A 		8.9
(-2.8)
A 		40.5
(3)
A 		9
(-2.8)
A 		19.6
(-0.8)
A 		22.4
(-0.3)
A 		33
B 5.2
(-3)
A 		9
(-2.6)
A 		40.6
(0.7)
A 		21.3
(-1.3)
A 		45.7
(1.3)
A 		62.1
(3)
A 		57
C 5.3
(-3)
A 		55.4
(2.2)
A 		16.8
(-1.8)
A 		7.4
(-2.8)
A 		24.6
(-1)
A 		63.6
(3)
A 		58
avr 6.1
(-3) 		24.4
(-0.5) 		32.6
(0.7) 		12.6
(-2.1) 		30
(0.3) 		49.4
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.5
(-2.4)
A 		0.9
(-3)
A 		4.4
(0.6)
A 		6.8
(3)
A 		6
B 6.6
(3)
A 		1.2
(-3)
A 		1.9
(-2.2)
A 		1.9
(-2.2)
A 		5
C 2.1
(-3)
A 		8.1
(3)
A 		2.7
(-2.4)
A 		2.4
(-2.7)
A 		6
avr 3.4
(0.4) 		3.4
(0.4) 		3
(-3) 		3.7
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.5
(-3)
A 		3.2
(-1.6)
A 		8.8
(3)
A 		2.3
(-2.3)
A 		5.9
(0.6)
A 		5.5
(0.3)
A 		7
B 1.8
(-3)
A 		3
(-2.7)
A 		9.9
(-0.7)
A 		5.7
(-1.9)
A 		18.6
(1.7)
A 		23.1
(3)
A 		21
C 2
(-2.8)
A 		16.9
(1.7)
A 		4.3
(-2.2)
A 		1.5
(-3)
A 		8
(-1)
A 		21.3
(3)
A 		20
avr 1.8
(-3) 		7.7
(-0.6) 		7.7
(-0.6) 		3.2
(-2.4) 		10.8
(0.6) 		16.6
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8808
Sequence Type Exemplar sequence
Representative Public ID F38H4.5 NCBI
Target Description F38H4.5 /REP_DB=WormBase Gene ID /WP=CE10066 /TR=Q20180 /GB=CAB01173.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069844 NCBI Caenorhabditis elegans F38H4.5 (F38H4.5) mRNA, complete cds. 11/11 None
GENEFINDER00000007687 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11852163:11853116:1 11/11 None
F38H4.5 ENSEMBL cdna:known chromosome:CEL140:IV:11852163:11853116:1 gene:F38H4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007681 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11852168-11853122(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38H4.5
Entrez Gene 185480 Entrez gene
SwissProt Q20180 EMBL-EBI
WormBase CE10066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01173 Hypothetical protein F38H4.5 [Caenorhabditis elegans] ref|NP_502245.1| F38H4.5 [Caenorhabditis elegans] 1.0E-168
blast CAE62133 Hypothetical protein CBG06177 [Caenorhabditis briggsae] 1.0E-156
blast AAB04595 Hypothetical protein T22B7.3 [Caenorhabditis elegans] ref|NP_508952.2| T22B7.3 [Caenorhabditis elegans] emb|CAE68776.1| Hypothetical protein CBG14718 [Caenorhabditis briggsae] 6.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003198 EMBL-EBI Amidinotransferase 4.2E-103
Sequence
Target Sequence 
>C. ELEGANS:178216_AT
tatatttgtcacattttgccttccccgaaagatatggagaacatgtgttctataaacgat
ttttcgacaagctcggctatcagacttctttcaatcataaaattattcacgaaggagccg
gagatgcgttgtggtgtggcaatggaatgaatattcttgtgagtggagttggaccaagat
ctgatgttcaagcgtgtcaggacatcaaacggaagttgaagttaaattctgacgatacgt
tctacgtagtcgcagctcgtctggtagatccacgtttttatcacgttgatacatgtttct
gtccgcttgatgaggacctagcaatggcttacatgccagcattcgacagtgtttcccaga
acaatattcgaaactacacggatctcttaccggttcctgagaaagatgcccgccggtttg
tgtgcaattccgtggtgattggcaaaaacgtaatagttcatcatggttcagacacgacgt
ttaagctgctagagcaacatggattccaggttcatccgattgacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATTTGTCACATTTTGCCTTCCC 681 661 284 Antisense
GACAAGCTCGGCTATCAGACTTCTT 186 365 349 Antisense
TACGTTCTACGTAGTCGCAGCTCGT 603 647 519 Antisense
AGCTCGTCTGGTAGATCCACGTTTT 189 79 537 Antisense
TGATACATGTTTCTGTCCGCTTGAT 260 565 570 Antisense
CATGCCAGCATTCGACAGTGTTTCC 534 211 615 Antisense
GAAACTACACGGATCTCTTACCGGT 407 339 653 Antisense
GAGAAAGATGCCCGCCGGTTTGTGT 489 391 682 Antisense
GTTCATCATGGTTCAGACACGACGT 22 445 739 Antisense
GACACGACGTTTAAGCTGCTAGAGC 495 367 754 Antisense
GATTCCAGGTTCATCCGATTGACAT 378 433 785 Antisense
Sequence Source Affymetrix Proprietary Database