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[178215_at]

Description C41G6.6 /REP_DB=WormBase Gene ID /WP=CE23590 /TR=O17659 /GB=CAB02831.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 6.1
(1.1)
A 		1.4
(-3)
A 		1.4
(-3)
A 		8.3
(3)
A 		7
B 5.6
(-2.3)
A 		5
(-2.5)
A 		2.9
(-3)
A 		27.1
(3)
A 		24
C 48.1
(3)
A 		4.9
(-2.5)
A 		0.7
(-3)
A 		31.3
(0.9)
A 		47
avr 19.9
(2.3) 		3.8
(-2.4) 		1.7
(-3) 		22.2
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.8
(-2.3)
A 		3.2
(-2.1)
A 		1.8
(-3)
A 		8.6
(1.5)
A 		2
(-2.9)
A 		10.9
(3)
A 		9
B 2.5
(-2.9)
A 		4.2
(-0.8)
A 		2.4
(-3)
A 		5
(0.3)
A 		7.2
(3)
A 		3.3
(-1.9)
A 		5
C 2.2
(-2.4)
A 		4.2
(-1.2)
A 		2.2
(-2.4)
A 		10.8
(3)
A 		1.3
(-3)
A 		1.6
(-2.8)
A 		10
avr 2.5
(-2.6) 		3.9
(-1.2) 		2.1
(-3) 		8.1
(3) 		3.5
(-1.6) 		5.3
(0.2) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.2
(3)
A 		0.3
(-3)
A 		0.4
(-2.7)
A 		1.2
(-0.2)
A 		2
B 1.8
(-1.7)
A 		1.2
(-2.4)
A 		0.7
(-3)
A 		5.8
(3)
A 		5
C 15.9
(3)
A 		1.4
(-2.6)
A 		0.3
(-3)
A 		5.3
(-1.1)
A 		16
avr 6.6
(3) 		1
(-2.5) 		0.5
(-3) 		4.1
(0.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.5
(-2.7)
A 		1.1
(-1.1)
A 		0.4
(-3)
A 		2.2
(1.9)
A 		0.6
(-2.5)
A 		2.6
(3)
A 		2
B 0.9
(-2.2)
A 		1.4
(-0.9)
A 		0.6
(-3)
A 		1.3
(-1.2)
A 		2.9
(3)
A 		1.2
(-1.4)
A 		2
C 0.8
(-1.7)
A 		1.3
(0)
A 		0.6
(-2.3)
A 		2.2
(3)
A 		0.4
(-3)
A 		0.5
(-2.7)
A 		2
avr 0.7
(-2.1) 		1.3
(0.4) 		0.5
(-3) 		1.9
(3) 		1.3
(0.4) 		1.4
(0.9) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13093
Sequence Type Exemplar sequence
Representative Public ID C41G6.6 NCBI
Target Description C41G6.6 /REP_DB=WormBase Gene ID /WP=CE23590 /TR=O17659 /GB=CAB02831.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074361 NCBI Caenorhabditis elegans C41G6.6 (C41G6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000010451 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15224268:15225906:1 11/11 None
C41G6.6 ENSEMBL cdna:known chromosome:CEL140:V:15224268:15225700:1 gene:C41G6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010437 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15224267-15225700(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C41G6.6
Entrez Gene 183382 Entrez gene
SwissProt O17659 EMBL-EBI
WormBase CE34530 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02831 Hypothetical protein C41G6.6 [Caenorhabditis elegans] ref|NP_506762.2| C41G6.6 [Caenorhabditis elegans] 0.0
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 5.0E-62
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 2.0E-61
blast CAE58054 Hypothetical protein CBG01133 [Caenorhabditis briggsae] 6.0E-56
blast CAE58054 Hypothetical protein CBG01133 [Caenorhabditis briggsae] 9.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 4.8E-6
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.0E-16
Sequence
Target Sequence 
>C. ELEGANS:178215_AT
gactttcaatcttcacgagctatcaaatgcgacaaaatttgatctacaactttacgagtt
aggtccaaaattctgcattagcgttgaggacgtagagtattacacttacattgaccattt
tgatgttgtgactttatatgcaaactattgtgagccaatttacaatccaaacgataattt
gtgtaatgtgaagttgcgatcgactttggaaggatgtacccgggtctttggagacctggc
tattggaccatattatgatgtggcaactttgaagtcagtcgagataatatttggatcact
tattattaatggtactaacttcgagataattgattttttcctcaatctcaagtatatcat
ccagctgggaataagagaacgcggtaacgtagaaaacgcgccagtgatagttgtggaaaa
caacaaaaatttggtggatttctcaataccttcactgaagaaaattcgatcaagcacgat
gaatgctgtagtttttaaaaagaataacgagaagttcatggccgacccgaaaatttgttt
cgggatcaagatggcattaaacatcacacatttctacactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTTCAATCTTCACGAGCTATCA 188 373 594 Antisense
AGGTCCAAAATTCTGCATTAGCGTT 546 55 654 Antisense
ATTACACTTACATTGACCATTTTGA 55 13 692 Antisense
GAAGGATGTACCCGGGTCTTTGGAG 123 333 802 Antisense
GGAGACCTGGCTATTGGACCATATT 602 517 823 Antisense
TTGATTTTTTCCTCAATCTCAAGTA 424 705 923 Antisense
ATCTCAAGTATATCATCCAGCTGGG 65 31 938 Antisense
GAAAACGCGCCAGTGATAGTTGTGG 17 355 985 Antisense
GGTGGATTTCTCAATACCTTCACTG 523 499 1026 Antisense
AGTTCATGGCCGACCCGAAAATTTG 370 63 1106 Antisense
TAAACATCACACATTTCTACACTCC 214 641 1151 Antisense
Sequence Source Affymetrix Proprietary Database