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[178214_at]

Description ZC443.2 /REP_DB=WormBase Gene ID /WP=CE06586 /TR=Q23322 /GB=CAA99949.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_high_8_8 > 20      6grp_highest_nonorm > 71      6grp_total > 82      4grp_total > 20      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 204.8
(0.2)
P 		188.9
(-0.2)
P 		73.6
(-3)
A 		318.4
(3)
P 		245
B 99.1
(-2.9)
P 		144.6
(-1.8)
A 		95.6
(-3)
P 		333.9
(3)
P 		238
C 279.9
(1.4)
P 		174.4
(-1.4)
M 		114.5
(-3)
P 		341
(3)
P 		227
avr 194.6
(-0.5) 		169.3
(-1.1) 		94.6
(-3) 		331.1
(3) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 164.3
(-3)
P 		246.1
(-2)
P 		280.2
(-1.5)
P 		427.7
(0.3)
P 		640.2
(3)
P 		175.5
(-2.9)
P 		476
B 205.2
(-3)
P 		225.4
(-2.6)
P 		298.9
(-1.4)
P 		422.4
(0.8)
P 		549.5
(3)
P 		228.1
(-2.6)
P 		344
C 133.2
(-3)
P 		170.3
(-2.5)
P 		245.3
(-1.6)
P 		600.8
(3)
P 		513.4
(1.9)
P 		182.5
(-2.4)
P 		468
avr 167.6
(-3) 		213.9
(-2.3) 		274.8
(-1.4) 		483.6
(1.7) 		567.7
(3) 		195.4
(-2.6) 		400
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 74.6
(3)
P 		41
(-0.6)
P 		19.3
(-3)
A 		46.6
(-0)
P 		55
B 31.6
(-1.8)
P 		35.7
(-1.3)
A 		22.1
(-3)
P 		71.1
(3)
P 		49
C 92.7
(3)
P 		50.1
(-1.8)
M 		39.9
(-3)
P 		57.5
(-1)
P 		53
avr 66.3
(3) 		42.3
(-0.7) 		27.1
(-3) 		58.4
(1.8) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 30.3
(-3)
P 		87.5
(-0.9)
P 		61
(-1.9)
P 		108.5
(-0.1)
P 		193.2
(3)
P 		42.7
(-2.5)
P 		163
B 71.4
(-3)
P 		75
(-2.9)
P 		72.6
(-3)
P 		111.9
(-1.4)
P 		223.2
(3)
P 		85
(-2.5)
P 		152
C 49.4
(-3)
P 		52
(-2.9)
P 		62.4
(-2.3)
P 		120.8
(0.7)
P 		166.1
(3)
P 		61.1
(-2.4)
P 		117
avr 50.4
(-3) 		71.5
(-2.1) 		65.3
(-2.4) 		113.7
(-0.4) 		194.2
(3) 		62.9
(-2.5) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14778
Sequence Type Exemplar sequence
Representative Public ID ZC443.2 NCBI
Target Description ZC443.2 /REP_DB=WormBase Gene ID /WP=CE06586 /TR=Q23322 /GB=CAA99949.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073805 NCBI Caenorhabditis elegans ZC443.2 (ZC443.2) mRNA, complete cds. 11/11 None
SNAP00000030943 ENSEMBL cdna:SNAP chromosome:CEL140:V:12813082:12813747:-1 11/11 None
ZC443.2 ENSEMBL cdna:known chromosome:CEL140:V:12813082:12813747:-1 gene:ZC443.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030949 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12813081-12813747(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC443.2
Entrez Gene 179757 Entrez gene
SwissProt Q23322 EMBL-EBI
WormBase CE06586 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99949 Hypothetical protein ZC443.2 [Caenorhabditis elegans] ref|NP_506206.1| ZC443.2 [Caenorhabditis elegans] 3.0E-78
blast CAE64003 Hypothetical protein CBG08597 [Caenorhabditis briggsae] 6.0E-41
Sequence
Target Sequence 
>C. ELEGANS:178214_AT
tggagagatacattcccaaaatcggagcacaaattgatgtcaattgagtatgtcgctgcg
attgaagaattcaatgagtatttccctggatatgctgcaatgaatgatagtaactattca
aaacttcagcatttcttccgttctcttcacccaattggatgtattaaacctttccgattt
cattattcatcggcatttgcattggaaaactcattagatgactatcttctaaaaaatgct
caattcaaaagagacggcttagctggagaatgggcgattcacatctttgccgaccacaac
gaccatattatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGAGATACATTCCCAAAATCGG 399 547 37 Antisense
GTCAATTGAGTATGTCGCTGCGATT 396 463 75 Antisense
GAGTATTTCCCTGGATATGCTGCAA 304 399 112 Antisense
AAAACTTCAGCATTTCTTCCGTTCT 463 129 156 Antisense
CGTTCTCTTCACCCAATTGGATGTA 282 247 175 Antisense
AAACCTTTCCGATTTCATTATTCAT 665 125 202 Antisense
TTCATTATTCATCGGCATTTGCATT 490 689 215 Antisense
GATGACTATCTTCTAAAAAATGCTC 336 409 253 Antisense
GACGGCTTAGCTGGAGAATGGGCGA 250 375 289 Antisense
ATGGGCGATTCACATCTTTGCCGAC 674 49 306 Antisense
TGCCGACCACAACGACCATATTATT 625 583 324 Antisense
Sequence Source Affymetrix Proprietary Database