[Home] | [Total List]

[178213_at]

Description C07E3.5 /REP_DB=WormBase Gene ID /WP=CE02121 /TR=Q17788 /GB=CAA90096.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 57.2
(3)
A 		3
(-3)
A 		3
(-3)
A 		9
(-2.3)
A 		54
B 24.8
(1)
A 		3.5
(-3)
A 		35.2
(3)
A 		26.3
(1.3)
A 		32
C 5.9
(-1.5)
A 		7.8
(-0.7)
A 		2.4
(-3)
A 		16.5
(3)
A 		14
avr 29.3
(3) 		4.8
(-3) 		13.5
(-0.9) 		17.3
(0.1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 44.2
(3)
A 		6.1
(-2.4)
A 		38
(2.1)
A 		18.5
(-0.7)
A 		2.2
(-3)
A 		3.7
(-2.8)
A 		42
B 5.7
(-0.7)
A 		6.1
(-0.3)
A 		9.3
(3)
A 		4.8
(-1.6)
A 		3.4
(-3)
A 		3.4
(-3)
A 		6
C 5.8
(-1.5)
A 		10.7
(0.3)
A 		3.3
(-2.4)
A 		18.4
(3)
A 		1.6
(-3)
A 		2.7
(-2.6)
A 		17
avr 18.6
(3) 		7.6
(-1.1) 		16.9
(2.4) 		13.9
(1.3) 		2.4
(-3) 		3.3
(-2.7) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.8
(3)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		1.3
(-2.8)
A 		20
B 7.9
(2.8)
A 		0.9
(-3)
A 		8.2
(3)
A 		5.6
(0.9)
A 		7
C 2
(0.6)
A 		2.2
(1.2)
A 		0.8
(-3)
A 		2.8
(3)
A 		2
avr 10.2
(3) 		1.2
(-3) 		3.3
(-1.6) 		3.2
(-1.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 8.2
(2.9)
A 		2.2
(-1.8)
A 		8.3
(3)
A 		4.7
(0.2)
A 		0.7
(-3)
A 		0.9
(-2.8)
A 		8
B 2
(1.2)
A 		2
(1.2)
A 		2.3
(3)
A 		1.3
(-3)
A 		1.4
(-2.4)
A 		1.3
(-3)
A 		1
C 2.2
(0.2)
A 		3.3
(2.3)
A 		0.8
(-2.4)
A 		3.7
(3)
A 		0.5
(-3)
A 		0.9
(-2.3)
A 		3
avr 4.1
(3) 		2.5
(0) 		3.8
(2.4) 		3.2
(1.3) 		0.9
(-3) 		1
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3670
Sequence Type Exemplar sequence
Representative Public ID C07E3.5 NCBI
Target Description C07E3.5 /REP_DB=WormBase Gene ID /WP=CE02121 /TR=Q17788 /GB=CAA90096.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063831(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063831 NCBI Caenorhabditis elegans C07E3.5 (C07E3.5) mRNA, complete cds. 11/11 None
SNAP00000023202 ENSEMBL cdna:SNAP chromosome:CEL140:II:10363616:10365537:-1 11/11 None
GENEFINDER00000023212 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10363616:10365537:-1 11/11 None
C07E3.5 ENSEMBL cdna:known chromosome:CEL140:II:10363616:10365537:-1 gene:C07E3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10363612-10365534(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C07E3.5
Entrez Gene 182370 Entrez gene
SwissProt Q17788 EMBL-EBI
WormBase CE02121 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90096 Hypothetical protein C07E3.5 [Caenorhabditis elegans] ref|NP_496232.1| C07E3.5 [Caenorhabditis elegans] 0.0
blast CAA90096 Hypothetical protein C07E3.5 [Caenorhabditis elegans] ref|NP_496232.1| C07E3.5 [Caenorhabditis elegans] 1.0E-177
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 8.99999984540045E-4
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 7.00000009601354E-6
Pfam IPR001356 EMBL-EBI Homeobox 13.0
Pfam IPR001356 EMBL-EBI Homeobox 0.0020
Sequence
Target Sequence 
>C. ELEGANS:178213_AT
cttcctcgttcttctgatcacagagacgatgtggtgcaaatttcgaggatagcagccttg
ccatctgcacaaaaagaactcacaactcggaatatgaaaagaaattccgatgaaattgca
gaggctgagcatacaagaaatttcaatgatccgttggaaccattcccaattattcatcga
aaaaacattcgattgacagatgatcaagttagagaagaatacttcaatcgtcaaagaatg
tatcctcatgagaaaaacgttaagagtaaagaagccgaaaataattattcttcagaggcc
gattctgaagattctccagaagtggttccagttcagcaacaaaaacgacgaccccggcag
aatttttccaatacaatctcgaacgagctgaggattgtacaagagcgattccacgggagt
gttccgaaaaaagacgctgaggaggttgctgaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCTCGTTCTTCTGATCACAGAG 600 219 496 Antisense
TTCGAGGATAGCAGCCTTGCCATCT 335 695 537 Antisense
CAGCCTTGCCATCTGCACAAAAAGA 425 203 548 Antisense
GAAATTTCAATGATCCGTTGGAACC 159 363 632 Antisense
GGAACCATTCCCAATTATTCATCGA 263 531 651 Antisense
TAATTATTCTTCAGAGGCCGATTCT 464 629 777 Antisense
GATTCTCCAGAAGTGGTTCCAGTTC 662 431 805 Antisense
TCAGCAACAAAAACGACGACCCCGG 140 621 828 Antisense
GGCAGAATTTTTCCAATACAATCTC 291 535 851 Antisense
GAGCGATTCCACGGGAGTGTTCCGA 558 385 898 Antisense
AAGACGCTGAGGAGGTTGCTGAATC 445 153 926 Antisense
Sequence Source Affymetrix Proprietary Database