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[178212_s_at]

Description R119.4 /REP_DB=WormBase Gene ID /WP=CE23925 /TR=O61708 /GB=AAD47125.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 37      6grp_total > 38      4grp_total > 02      6grp_highest_sub > Cu      6grp_cgc > 17      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31033
1 2 3 4 range
A 5420.9
(-3)
P 		6327.3
(-2.8)
P 		5643.3
(-3)
P 		35814.3
(3)
P 		30393
B 5961.4
(-2.9)
P 		6010.7
(-2.9)
P 		5427.3
(-3)
P 		32341.3
(3)
P 		26914
C 5040.8
(-3)
P 		5493.8
(-2.9)
P 		5127.7
(-3)
P 		36074.2
(3)
P 		31033
avr 5474.4
(-3) 		5943.9
(-2.9) 		5399.4
(-3) 		34743.3
(3) 		29344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2354
1 2 3 4 5 6 range
A 6526.4
(3)
P 		5606.7
(0.7)
P 		4172.3
(-3)
P 		4789.2
(-1.4)
P 		4487.5
(-2.2)
P 		6382.9
(2.6)
P 		2354
B 6022.8
(3)
P 		5738.6
(1.9)
P 		4689.5
(-2.3)
P 		4786.7
(-1.9)
P 		4520.3
(-3)
P 		5780
(2)
P 		1503
C 5853.2
(3)
P 		5082.5
(-0.1)
P 		4965.5
(-0.6)
P 		4370.6
(-3)
P 		5848.2
(3)
P 		5606.1
(2)
P 		1483
avr 6134.1
(3) 		5475.9
(0.4) 		4609.1
(-3) 		4648.8
(-2.8) 		4952
(-1.7) 		5923
(2.2) 		1525
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5634
1 2 3 4 range
A 1973.7
(-2.1)
P 		1373.5
(-3)
P 		1475.3
(-2.8)
P 		5242.5
(3)
P 		3869
B 1901
(-2.3)
P 		1484.5
(-2.8)
P 		1257.6
(-3)
P 		6892
(3)
P 		5634
C 1668.7
(-2.9)
P 		1579.5
(-3)
P 		1787.2
(-2.7)
P 		6082.7
(3)
P 		4503
avr 1847.8
(-2.5) 		1479.2
(-3) 		1506.7
(-3) 		6072.4
(3) 		4593

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1291
1 2 3 4 5 6 range
A 1203.1
(-1.4)
P 		1994
(3)
P 		908.6
(-3)
P 		1214.7
(-1.3)
P 		1354.1
(-0.5)
P 		1554
(0.6)
P 		1085
B 2095.6
(2.6)
P 		1910.1
(1.6)
P 		1138.7
(-3)
P 		1267.8
(-2.2)
P 		1836.5
(1.1)
P 		2155.4
(3)
P 		1017
C 2169.5
(3)
P 		1550.8
(0.1)
P 		1263.8
(-1.2)
P 		878.9
(-3)
P 		1892.4
(1.7)
P 		1876.7
(1.6)
P 		1291
avr 1822.7
(2.7) 		1818.3
(2.7) 		1103.7
(-3) 		1120.5
(-2.9) 		1694.3
(1.7) 		1862
(3) 		758
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178212_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2600
Sequence Type Exemplar sequence
Representative Public ID R119.4 NCBI
Target Description R119.4 /REP_DB=WormBase Gene ID /WP=CE23925 /TR=O61708 /GB=AAD47125.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058326 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-59) (pqn-59) mRNA, complete cds. 11/11 A 
SNAP00000007613 ENSEMBL cdna:SNAP chromosome:CEL140:I:379247:381904:-1 11/11 None
GENEFINDER00000007619 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:379247:381904:-1 11/11 None
R119.4.2 ENSEMBL cdna:known chromosome:CEL140:I:373592:381907:-1 gene:R119.4 11/11 A 
R119.4.1 ENSEMBL cdna:known chromosome:CEL140:I:373592:381905:-1 gene:R119.4 11/11 A 
R119.4.3 ENSEMBL cdna:known chromosome:CEL140:I:378885:381905:-1 gene:R119.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:379246-381904(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-59
Ensembl R119.4
Entrez Gene 266819 Entrez gene
SwissProt O61708 EMBL-EBI
WormBase CE23925 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD47125 Prion-like-(q/n-rich)-domain-bearing protein protein 59 [Caenorhabditis elegans] ref|NP_490727.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-59) [Caenorhabditis elegans] 0.0
blast D87719 protein R119.4 [imported] - Caenorhabditis elegans 0.0
blast CAE74547 Hypothetical protein CBG22304 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178212_S_AT
caatcacaaccgactggacatccacaacagcatccacatatgatgttcactcaacaactc
ccatatgcaccatacatgaacaactacatgaacatgtacaatccaatgccaggagttcga
gatgagcaatatactgctgctcttatgcaatacggaatgggagttgatcttacaagcttg
cttccaactgctcctctgtcacaggctgcttctgcgcaacaagtgcaatctggtcaacaa
cgagagactcatggacttatggacttcaataagttcggatctcaaagctctcgggatcag
cagccacagcaggcgtcgaatgttggaccaccaccagggttccaggcgacgaactacatg
cagcagccaaacttgtcgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCACAACCGACTGGACATCCAC 387 181 1528 Antisense
ATCCACAACAGCATCCACATATGAT 668 39 1547 Antisense
ACAACTCCCATATGCACCATACATG 204 113 1581 Antisense
GTACAATCCAATGCCAGGAGTTCGA 385 461 1623 Antisense
ATACTGCTGCTCTTATGCAATACGG 138 23 1658 Antisense
CTTACAAGCTTGCTTCCAACTGCTC 657 219 1696 Antisense
GCAACAAGTGCAATCTGGTCAACAA 467 319 1743 Antisense
TAAGTTCGGATCTCAAAGCTCTCGG 363 637 1797 Antisense
GCAGGCGTCGAATGTTGGACCACCA 300 311 1836 Antisense
TCCAGGCGACGAACTACATGCAGCA 597 589 1868 Antisense
ACATGCAGCAGCCAAACTTGTCGTC 27 107 1883 Antisense
Sequence Source Affymetrix Proprietary Database