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[178211_at]

Description F08G5.1 /REP_DB=WormBase Gene ID /WP=CE05571 /TR=Q19220 /GB=CAA94583.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 37
(-2.6)
A 		32.4
(-3)
A 		45.5
(-1.9)
A 		104.9
(3)
A 		73
B 42.5
(-0.8)
A 		24
(-3)
A 		58.4
(1)
A 		75.6
(3)
A 		52
C 54.3
(1.1)
A 		10.3
(-3)
A 		71.3
(2.6)
A 		75.3
(3)
A 		65
avr 44.6
(-0.9) 		22.2
(-3) 		58.4
(0.4) 		85.3
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 35.8
(-2.6)
A 		14.1
(-3)
A 		45.8
(-2.4)
A 		99.3
(-1.4)
A 		307.5
(2.7)
P 		324.6
(3)
P 		311
B 47.1
(-2.4)
A 		19.3
(-3)
A 		45.5
(-2.5)
A 		147.4
(-0.3)
M 		286.1
(2.6)
P 		305.5
(3)
P 		286
C 21.5
(-3)
A 		52.1
(-2.5)
A 		41.6
(-2.6)
A 		112.6
(-1.4)
P 		251.9
(1.1)
P 		357.4
(3)
P 		336
avr 34.8
(-2.9) 		28.5
(-3) 		44.3
(-2.7) 		119.8
(-1.2) 		281.8
(2.1) 		329.2
(3) 		301
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 13.5
(1.6)
A 		7
(-3)
A 		11.9
(0.5)
A 		15.4
(3)
A 		8
B 13.6
(1.5)
A 		5.9
(-3)
A 		13.5
(1.5)
A 		16.1
(3)
A 		10
C 18
(1.1)
A 		3
(-3)
A 		24.9
(3)
A 		12.7
(-0.3)
A 		22
avr 15
(2.1) 		5.3
(-3) 		16.8
(3) 		14.7
(1.9) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 6.6
(-2.9)
A 		5
(-3)
A 		10
(-2.7)
A 		25.2
(-1.6)
A 		92.8
(3)
P 		79
(2.1)
P 		88
B 16.4
(-2.5)
A 		6.4
(-3)
A 		11
(-2.7)
A 		39.1
(-1.2)
M 		116.3
(3)
P 		113.9
(2.9)
P 		110
C 8
(-3)
A 		15.9
(-2.6)
A 		10.6
(-2.9)
A 		22.7
(-2.2)
P 		81.5
(0.9)
P 		119.7
(3)
P 		112
avr 10.3
(-2.9) 		9.1
(-3) 		10.5
(-2.9) 		29
(-1.7) 		96.9
(2.5) 		104.2
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178211_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9793
Sequence Type Exemplar sequence
Representative Public ID F08G5.1 NCBI
Target Description F08G5.1 /REP_DB=WormBase Gene ID /WP=CE05571 /TR=Q19220 /GB=CAA94583.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069968(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069968 NCBI Caenorhabditis elegans F08G5.1 (F08G5.1) mRNA, complete cds. 11/11 None
SNAP00000043805 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12408904:12410311:1 11/11 None
GENEFINDER00000043819 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12408904:12410311:1 11/11 None
F08G5.1 ENSEMBL cdna:known chromosome:CEL140:IV:12409048:12410374:1 gene:F08G5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12409053-12410317(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08G5.1
Entrez Gene 178192 Entrez gene
SwissProt Q19220 EMBL-EBI
WormBase CE05571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94583 Hypothetical protein F08G5.1 [Caenorhabditis elegans] ref|NP_502369.1| F08G5.1 [Caenorhabditis elegans] 1.0E-178
blast CAA94583 Hypothetical protein F08G5.1 [Caenorhabditis elegans] ref|NP_502369.1| F08G5.1 [Caenorhabditis elegans] 1.0E-173
blast CAE59856 Hypothetical protein CBG03330 [Caenorhabditis briggsae] 2.0E-58
blast CAE59856 Hypothetical protein CBG03330 [Caenorhabditis briggsae] 1.0E-54
blast CAE59856 Hypothetical protein CBG03330 [Caenorhabditis briggsae] 3.0E-52
Sequence
Target Sequence 
>C. ELEGANS:178211_AT
aaatgaattcttctcacagccagtctacaatccttacaataggccagcgtcgagtgccag
cactgttagttcatcgattggctcggcttacagcgttctccacgatgattcaccattttc
tggattttcgccaaattcgaaccattctttgcaatttccgtgtcccagcccatcgcacag
ttcgtcattttccggattttcgcagagttcatcacactcttctcaattgtcctccagtcc
cgcaaacgcaccttcatttccggattttcacagcccaccctctgccaatgatatccagat
agatcaactcaatccggtgactgtggctcctcaaatcaagcaaactgcggacaaatgcgt
tcaaacagataaacaatatgttgatgaacgtttcgacgatcctgctttcctgaggagata
cataaagagagttatgagtgattcaaaaatggcgagattggttggaatgatgcgatctga
aattcgaaaacttccaaatgacgaatttgatgcattttacaaaaaagtcaaggatcacca
acgcactgctcccagctcgtcatcaaaaatcggtccccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGAATTCTTCTCACAGCCAGTC 600 119 456 Antisense
CAGCCAGTCTACAATCCTTACAATA 216 203 472 Antisense
CAATAGGCCAGCGTCGAGTGCCAGC 276 181 492 Antisense
GTGCCAGCACTGTTAGTTCATCGAT 325 477 509 Antisense
TTCATCGATTGGCTCGGCTTACAGC 581 687 525 Antisense
TACAGCGTTCTCCACGATGATTCAC 585 643 544 Antisense
AACCATTCTTTGCAATTTCCGTGTC 502 147 595 Antisense
TTCATTTCCGGATTTTCACAGCCCA 128 689 708 Antisense
CAACTCAATCCGGTGACTGTGGCTC 480 187 760 Antisense
TGAACGTTTCGACGATCCTGCTTTC 407 573 840 Antisense
GCTCGTCATCAAAAATCGGTCCCCC 656 297 1010 Antisense
Sequence Source Affymetrix Proprietary Database