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[178210_at]

Description Y69H2.9 /REP_DB=WormBase Gene ID /WP=CE22827 /TR=Q9U1U1 /GB=CAB63406.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      4grp_high_8_8 > 13      6grp_total > 85      4grp_total > 10      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 580
1 2 3 4 range
A 133.9
(-3)
P 		152.3
(-2.7)
P 		130.6
(-3)
P 		564.1
(3)
P 		434
B 135.3
(-2.6)
P 		158.1
(-2.3)
P 		102.9
(-3)
P 		600.1
(3)
P 		497
C 142.6
(-2.4)
P 		136.2
(-2.4)
M 		80.4
(-3)
P 		660.7
(3)
P 		580
avr 137.3
(-2.6) 		148.9
(-2.5) 		104.6
(-3) 		608.3
(3) 		504

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 102
(-2.6)
A 		74.7
(-3)
A 		310.1
(0.6)
P 		376.6
(1.6)
P 		426.3
(2.3)
P 		470.5
(3)
P 		396
B 123.8
(-2.7)
P 		104.6
(-3)
P 		248.2
(-0.4)
P 		375.1
(1.8)
P 		440.7
(3)
P 		439.1
(3)
P 		336
C 105.4
(-3)
P 		144.2
(-2.6)
P 		167.9
(-2.3)
P 		449.7
(0.8)
P 		289.2
(-1)
P 		648.9
(3)
P 		544
avr 110.4
(-3) 		107.8
(-3) 		242.1
(-1) 		400.5
(1.3) 		385.4
(1) 		519.5
(3) 		412
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 48.8
(-1.1)
P 		33.1
(-3)
P 		34.1
(-2.9)
P 		82.6
(3)
P 		50
B 43.2
(-1.9)
P 		39.1
(-2.1)
P 		23.9
(-3)
P 		127.9
(3)
P 		104
C 47.2
(-1.6)
P 		39.2
(-2.2)
M 		28
(-3)
P 		111.4
(3)
P 		83
avr 46.4
(-1.6) 		37.1
(-2.4) 		28.7
(-3) 		107.3
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 18.8
(-3)
A 		26.6
(-2.6)
A 		67.5
(-0.3)
P 		95.5
(1.2)
P 		128.7
(3)
P 		114.5
(2.2)
P 		110
B 43.1
(-2.7)
P 		34.8
(-3)
P 		60.3
(-1.9)
P 		99.3
(-0.3)
P 		179
(3)
P 		163.8
(2.4)
P 		144
C 39.1
(-3)
P 		44
(-2.8)
P 		42.7
(-2.9)
P 		90.4
(-1.3)
P 		93.6
(-1.2)
P 		217.2
(3)
P 		178
avr 33.7
(-3) 		35.1
(-2.9) 		56.8
(-1.9) 		95.1
(-0.2) 		133.8
(1.6) 		165.2
(3) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13143
Sequence Type Exemplar sequence
Representative Public ID Y69H2.9 NCBI
Target Description Y69H2.9 /REP_DB=WormBase Gene ID /WP=CE22827 /TR=Q9U1U1 /GB=CAB63406.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075249 NCBI Caenorhabditis elegans Y69H2.9 (Y69H2.9) mRNA, complete cds. 11/11 None
SNAP00000002603 ENSEMBL cdna:SNAP chromosome:CEL140:V:18704370:18707804:1 11/11 None
GENEFINDER00000002607 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18700276:18709165:1 11/11 None
Y69H2.9 ENSEMBL cdna:known chromosome:CEL140:V:18704161:18707888:1 gene:Y69H2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18704160-18707888(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69H2.9
Entrez Gene 190559 Entrez gene
SwissProt Q9U1U1 EMBL-EBI
WormBase CE22827 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63406 Hypothetical protein Y69H2.9 [Caenorhabditis elegans] ref|NP_507650.1| Y69H2.9 [Caenorhabditis elegans] 1.0E-174
blast CAB63406 Hypothetical protein Y69H2.9 [Caenorhabditis elegans] ref|NP_507650.1| Y69H2.9 [Caenorhabditis elegans] 1.0E-170
blast CAB63405 Hypothetical protein Y69H2.8 [Caenorhabditis elegans] ref|NP_507649.1| Y69H2.8 [Caenorhabditis elegans] 1.0E-159
blast CAB63406 Hypothetical protein Y69H2.9 [Caenorhabditis elegans] ref|NP_507650.1| Y69H2.9 [Caenorhabditis elegans] 1.0E-131
blast CAE73297 Hypothetical protein CBG20720 [Caenorhabditis briggsae] 2.0E-57
blast CAA16296 Hypothetical protein Y17D7C.2 [Caenorhabditis elegans] ref|NP_507652.1| Y17D7C.2 [Caenorhabditis elegans] 4.0E-39
blast CAA16296 Hypothetical protein Y17D7C.2 [Caenorhabditis elegans] ref|NP_507652.1| Y17D7C.2 [Caenorhabditis elegans] 1.0E-28
blast CAA99784 Hypothetical protein C44H9.6 [Caenorhabditis elegans] ref|NP_506214.1| C44H9.6 [Caenorhabditis elegans] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 9.5E-17
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.6E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507650.1 1 274-296
Y69H2.9 1 274-296
GENEFINDER00000002607 1 1225-1247
Sequence
Target Sequence 
>C. ELEGANS:178210_AT
atcaatcacgcttgggctatgctgaaagactgccatgagagccgaaaacaaccgacgtgc
attttaaagtttgtggagatgctgagagatatcgctgaaagcaaaacaaccaaagcgttc
tgccgtcgatattatcattacatcaacaatcgactaacaataatgaatgtaccactggaa
aattccgaatatattatgttttttgaccagaaacagaagctgttagctctgagagttgcg
aaatttgccggtgaggttaaaccagtaatttcactctcggagatggaaaatgtattaaat
aaatctacaatcgcttgctccgagtccaagagagctgtaaatgcatgcgttgtagaattt
ttcatttgttatacgatgttcaccgaggccaattgtacggaaaaacacgaaaattgtgtt
tcaaaaagcatggcgtcggctgactgcaagggaaccctcacatcagttttatggaatcgg
attgatgatatctctgcaattttatttctcattgctttctttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATCACGCTTGGGCTATGCTGA 679 25 346 Antisense
GAGAGCCGAAAACAACCGACGTGCA 243 391 382 Antisense
CAAAGCGTTCTGCCGTCGATATTAT 57 193 456 Antisense
AGTTGCGAAATTTGCCGGTGAGGTT 583 57 579 Antisense
AAACCAGTAATTTCACTCTCGGAGA 445 125 604 Antisense
AAATCTACAATCGCTTGCTCCGAGT 254 117 646 Antisense
GTTATACGATGTTCACCGAGGCCAA 356 447 713 Antisense
AAAAAGCATGGCGTCGGCTGACTGC 469 127 768 Antisense
GGCTGACTGCAAGGGAACCCTCACA 68 541 783 Antisense
GGAACCCTCACATCAGTTTTATGGA 688 529 796 Antisense
ATTTTATTTCTCATTGCTTTCTTTG 480 15 844 Antisense
Sequence Source Affymetrix Proprietary Database