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[178209_at]

Description T15D6.9 /REP_DB=WormBase Gene ID /WP=CE13696 /TR=Q9XU71 /GB=CAB05619.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 40.7
(0.4)
A 		5.3
(-3)
A 		15.3
(-2)
A 		67.7
(3)
A 		62
B 27
(3)
A 		9.1
(-2.6)
A 		7.7
(-3)
A 		20.6
(1)
A 		19
C 44
(1.7)
A 		12.9
(-3)
A 		13.1
(-3)
A 		52.2
(3)
A 		39
avr 37.2
(1.5) 		9.1
(-3) 		12
(-2.5) 		46.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 12.5
(-1.9)
A 		15
(-1.5)
A 		44.2
(3)
A 		5.1
(-3)
A 		9.7
(-2.3)
A 		8.5
(-2.5)
A 		39
B 11.7
(-1.4)
A 		26.4
(3)
A 		22.1
(1.7)
A 		15
(-0.4)
A 		6.5
(-3)
A 		24.9
(2.5)
A 		20
C 9.9
(1.9)
A 		11.1
(3)
A 		7.6
(-0.3)
A 		4.8
(-3)
A 		8.9
(0.9)
A 		8.4
(0.4)
A 		6
avr 11.4
(-1.9) 		17.5
(0.4) 		24.6
(3) 		8.3
(-3) 		8.4
(-3) 		13.9
(-0.9) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.8
(3)
A 		1.1
(-3)
A 		4
(-1.7)
A 		9.9
(0.9)
A 		14
B 8.6
(3)
A 		2.3
(-2.6)
A 		1.8
(-3)
A 		4.4
(-0.7)
A 		7
C 14.6
(3)
A 		3.7
(-3)
A 		4.6
(-2.5)
A 		8.8
(-0.2)
A 		11
avr 12.7
(3) 		2.4
(-3) 		3.5
(-2.4) 		7.7
(0.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.3
(-2.3)
A 		5.3
(-0.1)
A 		9.6
(3)
A 		1.3
(-3)
A 		2.9
(-1.8)
A 		2.1
(-2.4)
A 		8
B 4.1
(-1.7)
A 		8.8
(2.5)
A 		5.4
(-0.5)
A 		4
(-1.8)
A 		2.7
(-3)
A 		9.3
(3)
A 		7
C 3.7
(3)
A 		3.4
(2.3)
A 		1.9
(-1)
A 		1
(-3)
A 		2.9
(1.2)
A 		2.8
(1)
A 		3
avr 3.4
(-0.9) 		5.8
(3) 		5.6
(2.7) 		2.1
(-3) 		2.8
(-1.9) 		4.7
(1.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1742
Sequence Type Exemplar sequence
Representative Public ID T15D6.9 NCBI
Target Description T15D6.9 /REP_DB=WormBase Gene ID /WP=CE13696 /TR=Q9XU71 /GB=CAB05619.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060739 NCBI Caenorhabditis elegans T15D6.9 (T15D6.9) mRNA, complete cds. 11/11 None
T15D6.9 ENSEMBL cdna:known chromosome:CEL140:I:12400130:12401706:1 gene:T15D6.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012747 6/11 Cross Hyb Matching Probes None
GENEFINDER00000012752 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12400060-12401637(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15D6.9
Entrez Gene 188535 Entrez gene
SwissProt Q9XU71 EMBL-EBI
WormBase CE13696 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05619 Hypothetical protein T15D6.9 [Caenorhabditis elegans] ref|NP_493140.1| T15D6.9 [Caenorhabditis elegans] 0.0
blast CAB04978 Hypothetical protein ZK1053.1 [Caenorhabditis elegans] ref|NP_493319.1| ZK1053.1 [Caenorhabditis elegans] 1.0E-124
blast CAB04380 Hypothetical protein F41D3.9 [Caenorhabditis elegans] ref|NP_493099.1| F41D3.9 [Caenorhabditis elegans] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493140.1 1 7-24
T15D6.9 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:178209_AT
tattgcagaatctctagctcctcatagtaactttgcagttttaaatccaaaactcttaaa
attctttcccacgagctcattggagctgctgaaacaaaggactcaagtgcaagccggtct
cattttcctagcgcgcaccagatatacaatgaaacttttcaaatggatggtgctttgtgc
actcacagaagactgtatgaaccctccaggatctcagtcgatatgcattttccttcacga
ttggaacaagtactacgctgactgcttcagatatgatcagtctattatcaacctgctact
ggtcaacgattttacgggtattcataaatattactcggaaaagttgtcttcctcctttgt
gaaagttataattttgaacataattttgaatatttttacttttcgaagcgcccgacacta
ttcgggttctccgcgccgtgagaaggtcgacgaggccggcaatgagtctcctgaatccaa
gcactata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGCAGAATCTCTAGCTCCTCAT 525 665 663 Antisense
TTCTTTCCCACGAGCTCATTGGAGC 323 689 724 Antisense
AAGGACTCAAGTGCAAGCCGGTCTC 649 157 759 Antisense
TTTTCCTAGCGCGCACCAGATATAC 140 677 785 Antisense
CCCTCCAGGATCTCAGTCGATATGC 72 261 864 Antisense
GAACAAGTACTACGCTGACTGCTTC 697 351 906 Antisense
TCGGAAAAGTTGTCTTCCTCCTTTG 559 603 997 Antisense
AGCGCCCGACACTATTCGGGTTCTC 6 83 1069 Antisense
TCCGCGCCGTGAGAAGGTCGACGAG 34 597 1092 Antisense
TCGACGAGGCCGGCAATGAGTCTCC 43 603 1109 Antisense
GAGTCTCCTGAATCCAAGCACTATA 470 399 1126 Antisense
Sequence Source Affymetrix Proprietary Database