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[178208_at]

Description F11F1.2 /REP_DB=WormBase Gene ID /WP=CE15803 /TR=O45347 /GB=CAB02925.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 49      6grp_total > 92      4grp_total > 13      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 61.9
(0.8)
P 		31.4
(-3)
A 		41.7
(-1.7)
A 		79.1
(3)
P 		48
B 37.5
(-2.2)
P 		46.2
(-0.8)
A 		32.4
(-3)
A 		69.3
(3)
A 		37
C 44.4
(2.2)
P 		32
(-0.1)
A 		16
(-3)
A 		48.9
(3)
A 		33
avr 47.9
(0) 		36.5
(-1.9) 		30
(-3) 		65.8
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 62.5
(3)
P 		46.9
(0.6)
P 		47.9
(0.8)
P 		22.8
(-3)
A 		62.1
(2.9)
P 		28.1
(-2.2)
A 		40
B 47.3
(0.3)
P 		49.4
(0.6)
A 		25.1
(-3)
P 		44.1
(-0.2)
P 		65.6
(3)
P 		54.1
(1.3)
P 		41
C 45.2
(0.7)
A 		35.1
(-0.6)
A 		48.2
(1.1)
A 		61.9
(3)
M 		54.4
(2)
P 		17.8
(-3)
A 		44
avr 51.7
(1) 		43.8
(-0.7) 		40.4
(-1.4) 		42.9
(-0.9) 		60.7
(3) 		33.3
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 22.5
(3)
P 		6.8
(-3)
A 		10.9
(-1.4)
A 		11.6
(-1.2)
P 		16
B 12
(0.7)
P 		11.4
(0.2)
A 		7.5
(-3)
A 		14.8
(3)
A 		7
C 14.7
(3)
P 		9.2
(-0.6)
A 		5.6
(-3)
A 		8.3
(-1.2)
A 		9
avr 16.4
(3) 		9.1
(-2.2) 		8
(-3) 		11.6
(-0.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11.5
(-0.3)
P 		16.7
(2.1)
P 		10.4
(-0.9)
P 		5.8
(-3)
A 		18.7
(3)
P 		6.8
(-2.5)
A 		13
B 16.5
(0)
P 		16.4
(0)
A 		6.1
(-3)
P 		11.7
(-1.4)
P 		26.6
(3)
P 		20.2
(1.1)
P 		21
C 16.7
(2.5)
A 		10.7
(-0.5)
A 		12.3
(0.3)
A 		12.4
(0.3)
M 		17.6
(3)
P 		5.9
(-3)
A 		12
avr 14.9
(-0.2) 		14.6
(-0.4) 		9.6
(-3) 		10
(-2.8) 		21
(3) 		11
(-2.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178208_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6337
Sequence Type Exemplar sequence
Representative Public ID F11F1.2 NCBI
Target Description F11F1.2 /REP_DB=WormBase Gene ID /WP=CE15803 /TR=O45347 /GB=CAB02925.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067362 NCBI Caenorhabditis elegans F11F1.2 (F11F1.2) mRNA, complete cds. 11/11 None
SNAP00000021811 ENSEMBL cdna:SNAP chromosome:CEL140:III:13398415:13400036:1 11/11 None
GENEFINDER00000021820 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13398415:13400036:1 11/11 None
F11F1.2 ENSEMBL cdna:known chromosome:CEL140:III:13398415:13399293:1 gene:F11F1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13398410-13399248(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11F1.2
Entrez Gene 176763 Entrez gene
SwissProt O45347 EMBL-EBI
WormBase CE15803 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54300 Hypothetical protein F11F1.1 [Caenorhabditis elegans] emb|CAB54217.1| Hypothetical protein F11F1.1 [Caenorhabditis elegans] ref|NP_001021249.1| F11F1.1 [Caenorhabditis elegans] 1.0E-91
blast CAB02925 Hypothetical protein F11F1.2 [Caenorhabditis elegans] ref|NP_499763.1| F11F1.2 [Caenorhabditis elegans] 1.0E-81
blast CAB02925 Hypothetical protein F11F1.2 [Caenorhabditis elegans] ref|NP_499763.1| F11F1.2 [Caenorhabditis elegans] 8.0E-81
blast CAE62854 Hypothetical protein CBG07033 [Caenorhabditis briggsae] 8.0E-75
blast CAB02927 Hypothetical protein F11F1.5 [Caenorhabditis elegans] ref|NP_499765.1| F11F1.5 [Caenorhabditis elegans] 2.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 3.1E-39
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 1.9E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499763.1 1 7-26
F11F1.2 1 7-26
SNAP00000021811 1 7-26
GENEFINDER00000021820 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:178208_AT
ttccaggaagtgctctccctaaagtacaagaaattctctcgaatgtggataatcttggag
ttgaggaagttctatccaagcttaacggtcttgttcctggccttggagatgaacttgaaa
atcttatcacaacagttctcaatcttatcgaacagttgctcaaagaagttgccgatattc
ttcaaagtcttccagatgttttaggagaattatctaaaatcgtggatgaccaaaatttaa
catctgttgagaagaacgatgctatcaatcaattgaaaggaacaaacaaaattgaactca
atacaatcatttttattatcgctcaactcctcaacggaggagcacttccagaacatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCAGGAAGTGCTCTCCCTAAAGT 17 701 374 Antisense
AGGAAGTGCTCTCCCTAAAGTACAA 631 51 378 Antisense
TTCTCTCGAATGTGGATAATCTTGG 672 691 407 Antisense
GAGGAAGTTCTATCCAAGCTTAACG 15 405 436 Antisense
CAAGCTTAACGGTCTTGTTCCTGGC 558 185 450 Antisense
TCTTGTTCCTGGCCTTGGAGATGAA 448 615 462 Antisense
ACTTGAAAATCTTATCACAACAGTT 109 103 486 Antisense
TCACAACAGTTCTCAATCTTATCGA 23 629 500 Antisense
TCTCAATCTTATCGAACAGTTGCTC 484 613 510 Antisense
ATGACCAAAATTTAACATCTGTTGA 224 45 599 Antisense
CGGAGGAGCACTTCCAGAACATCCA 652 241 708 Antisense
Sequence Source Affymetrix Proprietary Database