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[178207_at]

Description R04D3.7 /REP_DB=WormBase Gene ID /WP=CE06227 /TR=Q21715 /GB=CAA94165.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 20      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 3.2
(-3)
A 		26.4
(-0.6)
A 		14.8
(-1.8)
A 		62.4
(3)
A 		59
B 24.7
(2.3)
A 		27.6
(3)
A 		14
(-0.3)
A 		2.5
(-3)
A 		25
C 29.9
(1.8)
A 		4
(-3)
A 		5.4
(-2.7)
A 		36.1
(3)
A 		32
avr 19.3
(-0.9) 		19.3
(-0.9) 		11.4
(-3) 		33.7
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 26.4
(1)
A 		38.8
(3)
A 		34.6
(2.3)
A 		24.3
(0.6)
A 		15.8
(-0.8)
A 		2.5
(-3)
A 		36
B 20.7
(2.9)
A 		4.6
(-2.3)
A 		4.6
(-2.3)
A 		20.9
(3)
A 		3.1
(-2.8)
A 		2.5
(-3)
A 		18
C 3.8
(-2.9)
A 		46.8
(3)
A 		37.3
(1.7)
A 		3.3
(-2.9)
A 		16
(-1.2)
A 		2.8
(-3)
A 		44
avr 17
(0.1) 		30.1
(3) 		25.5
(2) 		16.2
(-0) 		11.6
(-1) 		2.6
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.2
(-3)
A 		5.7
(0.4)
A 		3.9
(-0.9)
A 		9.1
(3)
A 		8
B 7.9
(3)
A 		6.8
(2.1)
A 		3.2
(-0.8)
A 		0.5
(-3)
A 		7
C 9.9
(3)
A 		1.2
(-3)
A 		1.9
(-2.5)
A 		6.1
(0.4)
A 		9
avr 6.3
(3) 		4.6
(-0.1) 		3
(-3) 		5.2
(1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.9
(-1)
A 		13.8
(3)
A 		7.5
(0.1)
A 		6.2
(-0.5)
A 		4.8
(-1.1)
A 		0.6
(-3)
A 		13
B 7.2
(3)
A 		1.5
(-2.4)
A 		1.1
(-2.8)
A 		5.5
(1.4)
A 		1.3
(-2.6)
A 		0.9
(-3)
A 		6
C 1.4
(-2.7)
A 		14.3
(3)
A 		9.5
(0.9)
A 		0.7
(-3)
A 		5.2
(-1)
A 		1
(-2.9)
A 		14
avr 4.5
(-0.6) 		9.9
(3) 		6
(0.4) 		4.1
(-0.8) 		3.8
(-1) 		0.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17839
Sequence Type Exemplar sequence
Representative Public ID R04D3.7 NCBI
Target Description R04D3.7 /REP_DB=WormBase Gene ID /WP=CE06227 /TR=Q21715 /GB=CAA94165.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077813 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-42) (srd-42) mRNA, complete cds. 11/11 None
GENEFINDER00000014118 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13298914:13307805:-1 11/11 None
R04D3.7 ENSEMBL cdna:known chromosome:CEL140:X:13301519:13303377:-1 gene:R04D3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13301518-13303377(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-42
Ensembl R04D3.7
Entrez Gene 187575 Entrez gene
SwissProt Q21715 EMBL-EBI
WormBase CE35594 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94166 Hypothetical protein R04D3.8 [Caenorhabditis elegans] ref|NP_510213.1| Serpentine Receptor, class D (delta) family member (srd-39) [Caenorhabditis elegans] 1.0E-178
blast CAA94165 Hypothetical protein R04D3.7 [Caenorhabditis elegans] ref|NP_510214.2| Serpentine Receptor, class D (delta) family member (srd-42) [Caenorhabditis elegans] 1.0E-159
blast CAA94165 Hypothetical protein R04D3.7 [Caenorhabditis elegans] ref|NP_510214.2| Serpentine Receptor, class D (delta) family member (srd-42) [Caenorhabditis elegans] 1.0E-120
blast CAA92176 Hypothetical protein F17A2.8 [Caenorhabditis elegans] emb|CAA92163.1| Hypothetical protein F17A2.8 [Caenorhabditis elegans] ref|NP_510068.1| Serpentine Receptor, class D (delta) family member (srd-44) [Caenorhabditis elegans] sp|O17823|SRD44_CAEEL Serpentine receptor class delta-44 (Protein srd-44) 1.0E-110
blast CAA94167 Hypothetical protein R04D3.9 [Caenorhabditis elegans] ref|NP_510215.1| Serpentine Receptor, class D (delta) family member (srd-43) [Caenorhabditis elegans] 1.0E-110
blast CAA94167 Hypothetical protein R04D3.9 [Caenorhabditis elegans] ref|NP_510215.1| Serpentine Receptor, class D (delta) family member (srd-43) [Caenorhabditis elegans] 4.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR005047 EMBL-EBI Caenorhabditis protein of unknown function DUF286 6.3E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510214.2 6 7-29,85-107,128-150,181-203,238-257,267-289
R04D3.7 6 7-29,85-107,128-150,181-203,238-257,267-289
GENEFINDER00000014118 15 10-29,80-102,112-130,286-308,328-350,411-433,463-485,497-519,558-580,587-609,641-663,676-698,736-758,778-800,815-837
Sequence
Target Sequence 
>C. ELEGANS:178207_AT
gcagcaaagcacgttgttcttccaaaaaagaatatttggattgcttgtgaaatatatctg
atcattattcaagctctacctcaagatatccgcaagagttacgaatctattaataaaaat
ttagaggaatactctgtgattggaataatgaattactcctttttacctagttctattaat
ggtgtaatcgtgaatggattagttgtagttgtaccaatttcatgtctaacgttaagaagg
aaaatattcaagcttctcagtggtcctaacaagtcttccgatactttgtacttgcaaaac
cggatttttcttcagggtctcacttttcaaatctttggtcatatcctggtttacgttccg
atttacatttgtacattcatcagctttatcacaaaaacagaatatacattttcacagttt
ttcatcttcgttcttcctagtctaacaacagtcgtggacccagttatcacaatgtatttt
gtgacgccttataggaagaaactgttgtgttggatgcgttcagcccagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCAAAGCACGTTGTTCTTCCAA 707 311 355 Antisense
GATCATTATTCAAGCTCTACCTCAA 149 421 414 Antisense
AATATTCAAGCTTCTCAGTGGTCCT 449 173 597 Antisense
TCAGTGGTCCTAACAAGTCTTCCGA 396 621 611 Antisense
AGTCTTCCGATACTTTGTACTTGCA 698 61 626 Antisense
TTCTTCAGGGTCTCACTTTTCAAAT 482 687 662 Antisense
GGTCATATCCTGGTTTACGTTCCGA 500 503 691 Antisense
GTACATTCATCAGCTTTATCACAAA 214 461 725 Antisense
ATCTTCGTTCTTCCTAGTCTAACAA 300 31 778 Antisense
AACAGTCGTGGACCCAGTTATCACA 192 137 801 Antisense
GTGTTGGATGCGTTCAGCCCAGAAT 425 485 861 Antisense
Sequence Source Affymetrix Proprietary Database