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[178205_s_at]

Description F12F6.1 /REP_DB=WormBase Gene ID /WP=CE05589 /TR=Q19372 /GB=CAA97796.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 56      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 76      6grp_total > 47      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 1265
(3)
P 		689.5
(-3)
P 		730.3
(-2.6)
P 		765.8
(-2.2)
P 		576
B 1008.9
(3)
P 		837.1
(-2.1)
P 		808.3
(-3)
P 		889.1
(-0.6)
P 		201
C 1223
(3)
P 		752.7
(-2.6)
P 		977.2
(0.1)
P 		718.2
(-3)
P 		505
avr 1165.6
(3) 		759.8
(-3) 		838.6
(-1.8) 		791
(-2.5) 		406

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 800
1 2 3 4 5 6 range
A 1194
(0.2)
P 		1376.8
(1.7)
P 		807.5
(-3)
P 		1358.3
(1.5)
P 		948.7
(-1.8)
P 		1541.3
(3)
P 		734
B 1197.5
(1.8)
P 		1040.6
(-0.2)
P 		872.4
(-2.3)
P 		1290.4
(3)
P 		820.7
(-3)
P 		1176.1
(1.5)
P 		470
C 1402.9
(1.1)
P 		948.1
(-3)
P 		1607.1
(3)
P 		1067.5
(-1.9)
P 		1143
(-1.2)
P 		1297.4
(0.2)
P 		659
avr 1264.8
(1.8) 		1121.8
(-0.5) 		1095.7
(-1) 		1238.7
(1.4) 		970.8
(-3) 		1338.3
(3) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 460.6
(3)
P 		149.7
(-2.4)
P 		190.9
(-1.6)
P 		112.1
(-3)
P 		349
B 321.7
(3)
P 		206.7
(-2.1)
P 		187.3
(-3)
P 		189.5
(-2.9)
P 		134
C 404.8
(3)
P 		216.4
(-1)
P 		340.6
(1.6)
P 		121.1
(-3)
P 		284
avr 395.7
(3) 		190.9
(-1.8) 		239.6
(-0.7) 		140.9
(-3) 		255

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 220.1
(-2.2)
P 		489.6
(3)
P 		175.8
(-3)
P 		344.5
(0.2)
P 		286.3
(-0.9)
P 		375.2
(0.8)
P 		314
B 416.7
(2.4)
P 		346.4
(0.6)
P 		211.8
(-3)
P 		341.8
(0.4)
P 		333.4
(0.2)
P 		438.6
(3)
P 		227
C 520
(3)
P 		289.3
(-1.5)
P 		409
(0.8)
P 		214.7
(-3)
P 		369.9
(0.1)
P 		434.3
(1.3)
P 		305
avr 385.6
(1.8) 		375.1
(1.4) 		265.5
(-3) 		300.3
(-1.6) 		329.9
(-0.4) 		416
(3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178205_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8877
Sequence Type Exemplar sequence
Representative Public ID F12F6.1 NCBI
Target Description F12F6.1 /REP_DB=WormBase Gene ID /WP=CE05589 /TR=Q19372 /GB=CAA97796.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069781 NCBI Caenorhabditis elegans F12F6.1 (F12F6.1) mRNA, complete cds. 11/11 None
SNAP00000024859 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11585195:11587771:1 9/11 None
GENEFINDER00000024868 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11585195:11587771:1 9/11 None
F12F6.1 ENSEMBL cdna:known chromosome:CEL140:IV:11585194:11588279:1 gene:F12F6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006483 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006491 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11584679-11588019(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F12F6.1
Entrez Gene 178081 Entrez gene
SwissProt Q19372 EMBL-EBI
WormBase CE34803 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97796 Hypothetical protein F12F6.1 [Caenorhabditis elegans] emb|CAA97791.2| Hypothetical protein F12F6.1 [Caenorhabditis elegans] ref|NP_502182.2| F12F6.1 [Caenorhabditis elegans] 0.0
blast CAE62096 Hypothetical protein CBG06123 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178205_S_AT
gtttgatggaaccgtcactcctatcactaaagaagctcttctgagcagcacggagcatct
taataactcgaaatcatccgtaccaacaggcatttcggaagcatctagttccactacaac
tccacgtgcttctcttgctcgtttcgaacgtcgtatgacatcagaagccccttctaccat
cggaagtttgaagcgtaaagcaactgaagaatctgagagctcatccacacctgctgctaa
gagagaaagtattcgaaacaagcagaagaaggagaaggaacagtactctgcatatccata
tgtctctgaagaagaagaagtcgccatatttgagaattctaatggaaatccgcaagttta
tggtagagagctgggaagacttttgttcgctgaaaccataaaaaattacttcaaggatca
agatgccgacaaacgtcagtggatccacgagatactggacttcagattcccatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGATGGAACCGTCACTCCTATC 700 449 2148 Antisense
GAAGCTCTTCTGAGCAGCACGGAGC 244 343 2179 Antisense
AATCATCCGTACCAACAGGCATTTC 84 171 2219 Antisense
GAAGCATCTAGTTCCACTACAACTC 540 341 2245 Antisense
TCTCTTGCTCGTTTCGAACGTCGTA 8 613 2278 Antisense
CGTCGTATGACATCAGAAGCCCCTT 605 243 2296 Antisense
GCCCCTTCTACCATCGGAAGTTTGA 161 285 2314 Antisense
TCATCCACACCTGCTGCTAAGAGAG 514 621 2368 Antisense
GGAACAGTACTCTGCATATCCATAT 652 527 2424 Antisense
GATGCCGACAAACGTCAGTGGATCC 290 415 2569 Antisense
GATACTGGACTTCAGATTCCCATCA 690 423 2598 Antisense
Sequence Source Affymetrix Proprietary Database