[Home] | [Total List]

[178204_at]

Description T23F6.2 /REP_DB=WormBase Gene ID /WP=CE26007 /TR=Q9XU66 /GB=CAB05632.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 90.4
(-0.8)
A 		184.5
(3)
P 		159.5
(2)
P 		35.2
(-3)
A 		149
B 75.4
(-2.1)
A 		131.3
(2.2)
P 		142.2
(3)
P 		63.7
(-3)
A 		79
C 41.5
(-3)
A 		186
(3)
P 		87.3
(-1.1)
M 		117.6
(0.2)
A 		145
avr 69.1
(-3) 		167.3
(3) 		129.7
(0.7) 		72.2
(-2.8) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 86.1
(0.9)
A 		101.3
(2.4)
M 		92.7
(1.6)
A 		83.3
(0.7)
P 		107.8
(3)
A 		45.2
(-3)
A 		63
B 53.6
(-2.5)
A 		139
(3)
P 		121.5
(1.9)
P 		69.5
(-1.5)
A 		73.5
(-1.2)
M 		46
(-3)
A 		93
C 34.4
(-3)
A 		106.3
(3)
P 		82.1
(1)
A 		91
(1.7)
A 		79.9
(0.8)
A 		67.5
(-0.2)
A 		72
avr 58
(-2.5) 		115.5
(3) 		98.8
(1.4) 		81.3
(-0.3) 		87.1
(0.3) 		52.9
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 32.9
(1.6)
A 		40
(2.7)
P 		41.7
(3)
P 		5.1
(-3)
A 		37
B 24
(0.2)
A 		32.4
(2.8)
P 		33
(3)
P 		13.6
(-3)
A 		19
C 13.7
(-3)
A 		53.5
(3)
P 		30.4
(-0.5)
M 		19.8
(-2.1)
A 		40
avr 23.5
(-0.8) 		42
(3) 		35
(1.6) 		12.8
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 15.9
(-1.8)
A 		36
(3)
M 		20.2
(-0.8)
A 		21.1
(-0.6)
P 		32.5
(2.2)
A 		11
(-3)
A 		25
B 18.6
(-2.7)
A 		46.3
(3)
P 		29.5
(-0.5)
P 		18.4
(-2.8)
A 		29.8
(-0.4)
M 		17.2
(-3)
A 		29
C 12.7
(-3)
A 		32.4
(3)
P 		20.9
(-0.5)
A 		18.3
(-1.3)
A 		25.9
(1)
A 		22.6
(0)
A 		20
avr 15.7
(-3) 		38.2
(3) 		23.5
(-0.9) 		19.3
(-2) 		29.4
(0.7) 		16.9
(-2.7) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178204_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9315
Sequence Type Exemplar sequence
Representative Public ID T23F6.2 NCBI
Target Description T23F6.2 /REP_DB=WormBase Gene ID /WP=CE26007 /TR=Q9XU66 /GB=CAB05632.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070029 NCBI Caenorhabditis elegans T23F6.2 (T23F6.2) mRNA, complete cds. 11/11 None
SNAP00000000561 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12721697:12722965:1 11/11 None
GENEFINDER00000000570 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12721581:12723016:1 11/11 None
T23F6.2 ENSEMBL cdna:known chromosome:CEL140:IV:12721697:12722965:1 gene:T23F6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12721702-12722971(+) 99.47 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F6.2
Entrez Gene 188810 Entrez gene
SwissProt Q9XU66 EMBL-EBI
WormBase CE26007 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05632 Hypothetical protein T23F6.2 [Caenorhabditis elegans] ref|NP_502430.1| T23F6.2 [Caenorhabditis elegans] 1.0E-146
blast CAE59998 Hypothetical protein CBG03492 [Caenorhabditis briggsae] 1.0E-134
blast CAE62327 Hypothetical protein CBG06397 [Caenorhabditis briggsae] 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178204_AT
ttcttccgggactatacatcgcaggaaataaggttaacgaaaaacctcagactgtaccag
atgtgcatctacccggtcagccagctgttttctctggaagatccgcattcaatcctttca
cccatatggtttccgcagtgtacgctgaagatttgtccgatggttggggagcaggaatgg
ctgttaatggagtaaacaatcacggcttgaacgttcgaaaaaacttcgactcgtacgcag
atgtgcctttaaacttgaacgacggaatgtaccagccattcatctcagcgttcaccgtcg
gaggagaatatgatccatcgaagattcgcgaagtatcaggatctatggatctaccgattc
ctggagtcaatgagctattcgatttgaacggaagaattatgaccaagcacgctcttattg
taaacggagccatcgaattcccactaacactttcggatccaaatgagagagctccgtaca
cttttaagtacgctgtgtgggctcctgatcgtcacatggcttatggtcacgtcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTCCGGGACTATACATCGCAGG 245 689 149 Antisense
GGTCAGCCAGCTGTTTTCTCTGGAA 33 505 223 Antisense
TGGAAGATCCGCATTCAATCCTTTC 30 547 243 Antisense
AATCCTTTCACCCATATGGTTTCCG 487 165 259 Antisense
CTTCGACTCGTACGCAGATGTGCCT 445 219 372 Antisense
TCTCAGCGTTCACCGTCGGAGGAGA 35 613 431 Antisense
GGATCTACCGATTCCTGGAGTCAAT 363 511 495 Antisense
TAAACGGAGCCATCGAATTCCCACT 616 637 569 Antisense
ATTCCCACTAACACTTTCGGATCCA 324 9 585 Antisense
GAGAGAGCTCCGTACACTTTTAAGT 621 393 613 Antisense
GTCACATGGCTTATGGTCACGTCAT 688 463 659 Antisense
Sequence Source Affymetrix Proprietary Database