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[178201_at]

Description T27E7.5 /REP_DB=WormBase Gene ID /WP=CE16508 /TR=O45856 /GB=CAB05288.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.6
(-3)
A 		2.3
(-2.9)
A 		3.6
(-2.6)
A 		31.6
(3)
A 		30
B 4.1
(-3)
A 		4.2
(-2.7)
A 		6.1
(3)
A 		4.3
(-2.4)
A 		2
C 9.3
(1.7)
A 		2.5
(-3)
A 		7.9
(0.8)
A 		11.1
(3)
A 		9
avr 5
(-2.1) 		3
(-3) 		5.9
(-1.6) 		15.7
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.1
(-3)
A 		23.6
(3)
A 		23
(2.8)
A 		2.2
(-2.9)
A 		3.9
(-2.5)
A 		2
(-3)
A 		22
B 3.3
(-1.2)
A 		3.5
(-0.8)
A 		5.8
(3)
A 		4.1
(0.2)
A 		2.2
(-3)
A 		3.5
(-0.8)
A 		4
C 2.5
(-2.1)
A 		4.7
(0.3)
A 		1.7
(-2.9)
A 		5
(0.6)
A 		1.6
(-3)
A 		7.3
(3)
A 		6
avr 2.6
(-3) 		10.6
(3) 		10.2
(2.7) 		3.8
(-2.1) 		2.6
(-3) 		4.3
(-1.7) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.6
(-2.9)
A 		0.5
(-3)
A 		0.9
(-2.4)
A 		4.6
(3)
A 		4
B 1.3
(1.8)
A 		1
(-1.8)
A 		1.4
(3)
A 		0.9
(-3)
A 		0
C 3.1
(3)
A 		0.7
(-3)
A 		2.8
(2.3)
A 		1.9
(-0)
A 		2
avr 1.7
(0.3) 		0.7
(-3) 		1.7
(0.3) 		2.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-3)
A 		8.4
(3)
A 		5
(0.5)
A 		0.6
(-2.9)
A 		1.2
(-2.4)
A 		0.5
(-2.9)
A 		8
B 1.2
(0.6)
A 		1.1
(-0.6)
A 		1.4
(3)
A 		1.1
(-0.6)
A 		0.9
(-3)
A 		1.3
(1.8)
A 		0
C 0.9
(-1.5)
A 		1.4
(-0)
A 		0.4
(-3)
A 		1
(-1.2)
A 		0.5
(-2.7)
A 		2.4
(3)
A 		2
avr 0.8
(-3) 		3.6
(3) 		2.3
(0.2) 		0.9
(-2.8) 		0.9
(-2.8) 		1.4
(-1.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178201_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8867
Sequence Type Exemplar sequence
Representative Public ID T27E7.5 NCBI
Target Description T27E7.5 /REP_DB=WormBase Gene ID /WP=CE16508 /TR=O45856 /GB=CAB05288.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070362(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070362 NCBI Caenorhabditis elegans T27E7.5 (T27E7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000042444 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14536723:14538267:1 11/11 None
T27E7.5 ENSEMBL cdna:known chromosome:CEL140:IV:14537046:14538267:1 gene:T27E7.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042430 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14537051-14538273(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E7.5
Entrez Gene 188999 Entrez gene
SwissProt O45856 EMBL-EBI
WormBase CE16508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05288 Hypothetical protein T27E7.5 [Caenorhabditis elegans] ref|NP_502763.1| T27E7.5 [Caenorhabditis elegans] 1.0E-145
blast CAB05288 Hypothetical protein T27E7.5 [Caenorhabditis elegans] ref|NP_502763.1| T27E7.5 [Caenorhabditis elegans] 1.0E-138
blast CAB05290 Hypothetical protein T27E7.3 [Caenorhabditis elegans] ref|NP_502761.1| T27E7.3 [Caenorhabditis elegans] 2.0E-71
blast CAB05290 Hypothetical protein T27E7.3 [Caenorhabditis elegans] ref|NP_502761.1| T27E7.3 [Caenorhabditis elegans] 4.0E-71
blast CAE17979 Hypothetical protein T27E7.9 [Caenorhabditis elegans] ref|NP_001023405.1| T27E7.9 [Caenorhabditis elegans] 2.0E-48
blast CAE17979 Hypothetical protein T27E7.9 [Caenorhabditis elegans] ref|NP_001023405.1| T27E7.9 [Caenorhabditis elegans] 7.0E-48
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502763.1 4 28-50,94-116,139-161,182-204
T27E7.5 4 28-50,94-116,139-161,182-204
GENEFINDER00000042444 5 39-61,105-127,150-172,193-215,219-238
Sequence
Target Sequence 
>C. ELEGANS:178201_AT
atatcagactctcctagcttgtcacattttcgaactgagctcaaaactgggcaaagatga
gccacagctcacggaacttcaaattggcagaaaacaatatgaaatgaaaagcactattcg
gacgctttatatatgttgtattgtcagagatttggtattaactcccgtgatagtaatatg
gtcagccatgaacgtatctagatcaatttctcttgaagcattagattcaatcaaggatca
gttcacacttataagagttttccggctgattacattcgactcaattgtgctttttgtacc
agctgcggtattgtactatcttagtcagagaaggaacctgaataacaaggaacatgccaa
aaatccattacaagttcatatattccatcaggcaatgattatgacatcaataaaagcaat
aacagttgcactttgcacaataatgtctctcattgatcagaatctttctgtgatggataa
ctaccgctacactaatggaccaaattttggtagttgtgtcagttcaaatctctacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCAGACTCTCCTAGCTTGTCAC 268 19 171 Antisense
AGCTTGTCACATTTTCGAACTGAGC 698 77 186 Antisense
AGCACTATTCGGACGCTTTATATAT 444 77 280 Antisense
GATTTGGTATTAACTCCCGTGATAG 279 427 319 Antisense
GGTCAGCCATGAACGTATCTAGATC 521 503 350 Antisense
GTTTTCCGGCTGATTACATTCGACT 379 447 427 Antisense
GACTCAATTGTGCTTTTTGTACCAG 588 373 448 Antisense
GCTGCGGTATTGTACTATCTTAGTC 162 297 472 Antisense
GTTGCACTTTGCACAATAATGTCTC 413 439 595 Antisense
AACTACCGCTACACTAATGGACCAA 440 137 649 Antisense
GTTGTGTCAGTTCAAATCTCTACGA 430 437 683 Antisense
Sequence Source Affymetrix Proprietary Database