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[178200_at]

Description F08A8.6 /REP_DB=WormBase Gene ID /WP=CE17638 /TR=O62142 /GB=CAB16869.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 60      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 64.3
(1.4)
A 		82.4
(3)
A 		58.6
(0.9)
A 		13.6
(-3)
A 		69
B 32.7
(3)
A 		6.2
(-3)
A 		22.7
(0.7)
A 		7.1
(-2.8)
A 		27
C 6.7
(-1.2)
A 		11.9
(2)
A 		13.6
(3)
A 		3.8
(-3)
A 		10
avr 34.6
(3) 		33.5
(2.8) 		31.6
(2.3) 		8.2
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 42.8
(2.1)
A 		3.2
(-3)
A 		49.7
(3)
A 		45.8
(2.5)
A 		7.8
(-2.4)
A 		5
(-2.8)
A 		47
B 11.1
(-2.8)
A 		39
(3)
A 		10.3
(-3)
A 		22.9
(-0.4)
A 		12.3
(-2.6)
A 		15.1
(-2)
A 		29
C 3.5
(-3)
A 		3.9
(-2.9)
A 		31.3
(1.1)
A 		44.3
(3)
A 		19.1
(-0.7)
A 		16
(-1.2)
A 		41
avr 19.1
(-1.3) 		15.4
(-2.2) 		30.4
(1.3) 		37.7
(3) 		13.1
(-2.7) 		12
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 23.4
(3)
A 		17.9
(1.5)
A 		15.3
(0.7)
A 		2
(-3)
A 		21
B 10.4
(3)
A 		1.5
(-3)
A 		5.3
(-0.4)
A 		1.5
(-3)
A 		9
C 2.2
(-0.7)
A 		3.4
(1)
A 		4.8
(3)
A 		0.6
(-3)
A 		4
avr 12
(3) 		7.6
(0.5) 		8.5
(1) 		1.4
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.9
(0.9)
A 		1.2
(-3)
A 		10.8
(2.5)
A 		11.6
(3)
A 		2.4
(-2.3)
A 		1.2
(-3)
A 		10
B 3.9
(-2.2)
A 		13
(3)
A 		2.5
(-3)
A 		6.1
(-0.9)
A 		5
(-1.6)
A 		5.6
(-1.2)
A 		11
C 1.3
(-2.9)
A 		1.2
(-3)
A 		8
(2.3)
A 		8.9
(3)
A 		6.2
(0.9)
A 		5.4
(0.3)
A 		8
avr 4.4
(-2.6) 		5.1
(-1.8) 		7.1
(0.7) 		8.9
(3) 		4.5
(-2.5) 		4.1
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178200_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.870
Sequence Type Exemplar sequence
Representative Public ID F08A8.6 NCBI
Target Description F08A8.6 /REP_DB=WormBase Gene ID /WP=CE17638 /TR=O62142 /GB=CAB16869.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060859(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060859 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-138) (tag-138) mRNA, complete cds. 11/11 None
SNAP00000032478 ENSEMBL cdna:SNAP chromosome:CEL140:I:12942887:12945372:1 11/11 None
F08A8.6 ENSEMBL cdna:known chromosome:CEL140:I:12942887:12945372:1 gene:F08A8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032487 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12942817-12945303(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-138
Ensembl F08A8.6
Entrez Gene 184169 Entrez gene
SwissProt O62142 EMBL-EBI
WormBase CE17638 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5543 phospholipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16869 Hypothetical protein F08A8.6 [Caenorhabditis elegans] ref|NP_493260.1| Temporarily Assigned Gene name family member (tag-138) [Caenorhabditis elegans] 0.0
blast AAA28205 Hypothetical protein ZK370.3a [Caenorhabditis elegans] ref|NP_741253.1| ZK370.3a [Caenorhabditis elegans] sp|Q02328|SLAP2_CAEEL Protein SLA2 homolog 1.0E-109
blast AAL11480 Hypothetical protein ZK370.3b [Caenorhabditis elegans] ref|NP_498925.1| ZK370.3b [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 2.9E-37
Sequence
Target Sequence 
>C. ELEGANS:178200_AT
ggactcacttttggcattccaggagaaagtatatctattgtccaactcatctccacgatg
ggatcctaatactccacaaggtcaatgcctgatgcttcctctgataagtgtaataatgga
tacctggccattctttatttatatcgtcagaatgatgtacaatctgcacagtaacgtgtc
gccacacgaattggaaggctatcgttcccgatttcagacaattttcgagaaaactaaaca
attctacgaagagtgctcaaaacatcagtattttagatgttttgttcaaattccaacatt
tccattgcatgcacctaacttttttacacagtcagatcttgaatcttatcaaacatatct
aattggagaatccaagaaactgactgaaacagtaacaccagcagaagaggcccgcacccg
aattgaacattatgaaaaccgtttaaaagaaatgcacggggaattccagcatgtgagacg
agaagctgatgaaaatcgagaggaggttcagagactcagatacgagttggcactccgcga
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTCACTTTTGGCATTCCAGGAG 327 523 492 Antisense
ATATCTATTGTCCAACTCATCTCCA 274 21 522 Antisense
AACTCATCTCCACGATGGGATCCTA 701 139 535 Antisense
GGGATCCTAATACTCCACAAGGTCA 655 493 551 Antisense
CAAGGTCAATGCCTGATGCTTCCTC 648 181 568 Antisense
GATACCTGGCCATTCTTTATTTATA 210 425 610 Antisense
AATCTGCACAGTAACGTGTCGCCAC 472 169 652 Antisense
TGGAAGGCTATCGTTCCCGATTTCA 647 545 683 Antisense
CATTGCATGCACCTAACTTTTTTAC 185 215 794 Antisense
AGTAACACCAGCAGAAGAGGCCCGC 421 61 882 Antisense
CAGATACGAGTTGGCACTCCGCGAT 523 205 1008 Antisense
Sequence Source Affymetrix Proprietary Database