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[178199_s_at]

Description F58B3.4 /REP_DB=WormBase Gene ID /WP=CE06006 /TR=Q20969 /GB=CAA97802.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 58      4grp_high_8_8 > 26      6grp_highest_nonorm > 86      6grp_total > 56      4grp_total > 38      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 643
1 2 3 4 range
A 1453
(3)
P 		1094.3
(-0.9)
P 		894.9
(-3)
P 		1050.3
(-1.3)
P 		558
B 1441.3
(3)
P 		1236.2
(0.7)
P 		894.9
(-3)
P 		1219.8
(0.6)
P 		546
C 1538
(3)
P 		1205.2
(-0.8)
P 		1034
(-2.8)
P 		1016.2
(-3)
P 		522
avr 1477.4
(3) 		1178.6
(-0.3) 		941.3
(-3) 		1095.4
(-1.3) 		536

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 778
1 2 3 4 5 6 range
A 1000.4
(1.4)
P 		833.5
(-1.7)
P 		1088.8
(3)
P 		892.2
(-0.6)
P 		763.8
(-3)
P 		935.9
(0.2)
P 		325
B 1017.3
(-0.2)
P 		1045.2
(0)
P 		988.1
(-0.5)
P 		1017.3
(-0.2)
P 		719
(-3)
P 		1367.5
(3)
P 		649
C 739.5
(-1.7)
P 		1145.8
(1.7)
P 		784.9
(-1.4)
P 		736
(-1.8)
P 		589.4
(-3)
P 		1304.3
(3)
P 		715
avr 919.1
(-0.3) 		1008.2
(0.7) 		953.9
(0.1) 		881.8
(-0.8) 		690.7
(-3) 		1202.6
(3) 		512
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 375
1 2 3 4 range
A 529
(3)
P 		237.5
(-1.7)
P 		234
(-1.7)
P 		153.7
(-3)
P 		375
B 459.6
(3)
P 		305.3
(-0.7)
P 		207.4
(-3)
P 		259.9
(-1.8)
P 		252
C 509.1
(3)
P 		346.5
(0.1)
P 		360.4
(0.4)
P 		171.4
(-3)
P 		338
avr 499.2
(3) 		296.4
(-1) 		267.3
(-1.6) 		195
(-3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 184.4
(-3)
P 		296.4
(3)
P 		237.1
(-0.2)
P 		226.3
(-0.8)
P 		230.5
(-0.5)
P 		227.9
(-0.7)
P 		112
B 354
(-0.5)
P 		347.9
(-0.6)
P 		239.9
(-3)
P 		269.4
(-2.3)
P 		292.1
(-1.8)
P 		509.9
(3)
P 		270
C 274.1
(-0.4)
P 		349.6
(1.2)
P 		199.8
(-1.9)
P 		148
(-3)
P 		190.7
(-2.1)
P 		436.6
(3)
P 		289
avr 270.8
(-1.1) 		331.3
(1) 		225.6
(-2.6) 		214.6
(-3) 		237.8
(-2.2) 		391.5
(3) 		177
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178199_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10181
Sequence Type Exemplar sequence
Representative Public ID F58B3.4 NCBI
Target Description F58B3.4 /REP_DB=WormBase Gene ID /WP=CE06006 /TR=Q20969 /GB=CAA97802.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069794 NCBI Caenorhabditis elegans F58B3.4 (F58B3.4) mRNA, complete cds. 11/11 None
SNAP00000008573 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11628792:11631808:-1 11/11 None
GENEFINDER00000008589 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11628792:11631808:-1 11/11 None
F58B3.4 ENSEMBL cdna:known chromosome:CEL140:IV:11628416:11631811:-1 gene:F58B3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11628797-11631249(-) 84.84 100.0
Public Domain and Genome References
Gene Title
Ensembl F58B3.4
Entrez Gene 178088 Entrez gene
SwissProt Q20969 EMBL-EBI
WormBase CE36170 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97802 Hypothetical protein F58B3.4 [Caenorhabditis elegans] ref|NP_502195.2| F58B3.4 [Caenorhabditis elegans] 0.0
blast CAE62086 Hypothetical protein CBG06109 [Caenorhabditis briggsae] 1.0E-160
blast CAE62086 Hypothetical protein CBG06109 [Caenorhabditis briggsae] 1.0E-155
blast EAL39103 ENSANGP00000027260 [Anopheles gambiae str. PEST] ref|XP_553285.1| ENSANGP00000027260 [Anopheles gambiae str. PEST] 1.0E-35
blast EAL39103 ENSANGP00000027260 [Anopheles gambiae str. PEST] ref|XP_553285.1| ENSANGP00000027260 [Anopheles gambiae str. PEST] 9.0E-31
Sequence
Target Sequence 
>C. ELEGANS:178199_S_AT
aattgtggactctgatgaatcggatggtgatgaagcaaatcggaaaacacttatggctct
gttgaataccgatgaacgaaagtcaaaattagatgttgattgggaaggagaagagaagaa
tggaagtgattcctctgatggagaatatgttaaagtagatgatgatgatgaagagattgg
agtaaagcaaaagaaaaagaaaggatctgatgatgatgaagatgaaaaagaagaggtaga
agaaaagaaagaagatgtaaagctcacaggatacaaagcatataagaagaaacaaaaaca
aaagctgatggaaaataagttgaaaagaaagggaacatcaaaagaagctgagactaacat
caagaccgttgctgcagccgacagtatctcgaaagacgaccgtttctctgctttattcac
cgattctgcatatgctattgagccaagttccaagaaattcaagggatcgcttcttgtgac
gaagcaggctgaacaaaagtctaaaggatctagcactgtcatcgaaacgaagaaacccga
ggatctcgttcagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTGGACTCTGATGAATCGGAT 278 177 1233 Antisense
CTTATGGCTCTGTTGAATACCGATG 186 223 1282 Antisense
TAACATCAAGACCGTTGCTGCAGCC 433 639 1587 Antisense
TGCTGCAGCCGACAGTATCTCGAAA 376 581 1602 Antisense
TCGAAAGACGACCGTTTCTCTGCTT 296 601 1621 Antisense
TCTCTGCTTTATTCACCGATTCTGC 141 613 1637 Antisense
ATTCACCGATTCTGCATATGCTATT 661 9 1647 Antisense
ATGCTATTGAGCCAAGTTCCAAGAA 421 41 1664 Antisense
TTCAAGGGATCGCTTCTTGTGACGA 544 683 1690 Antisense
AGGATCTAGCACTGTCATCGAAACG 69 57 1737 Antisense
GAAACCCGAGGATCTCGTTCAGAAG 589 357 1764 Antisense
Sequence Source Affymetrix Proprietary Database