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[178198_at]

Description R11H6.3 /REP_DB=WormBase Gene ID /WP=CE12774 /TR=O18001 /GB=CAB07647.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 47      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 181.8
(-3)
P 		203.9
(-2.6)
P 		202.4
(-2.6)
P 		503
(3)
P 		321
B 196.2
(-2.8)
P 		191.4
(-2.9)
P 		184.9
(-3)
P 		524.1
(3)
P 		339
C 201.8
(-2.8)
P 		189.4
(-3)
P 		190.7
(-3)
P 		509
(3)
P 		320
avr 193.3
(-3) 		194.9
(-3) 		192.7
(-3) 		512
(3) 		319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 282
(3)
P 		228.1
(1)
P 		123.4
(-3)
P 		154.1
(-1.8)
P 		158.8
(-1.7)
P 		254.9
(2)
P 		159
B 278
(3)
P 		194.9
(-0.6)
P 		165.8
(-1.9)
P 		140.6
(-3)
P 		170.1
(-1.7)
P 		269.1
(2.6)
P 		137
C 249.2
(1.2)
P 		199.5
(-0.7)
P 		177.2
(-1.5)
P 		181.3
(-1.4)
P 		137.9
(-3)
P 		297.1
(3)
P 		159
avr 269.7
(2.8) 		207.5
(-0.4) 		155.5
(-3) 		158.7
(-2.8) 		155.6
(-3) 		273.7
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 66.2
(1.5)
P 		44.3
(-3)
P 		52.9
(-1.2)
P 		73.6
(3)
P 		29
B 62.6
(-1.3)
P 		47.3
(-2.6)
P 		42.9
(-3)
P 		111.7
(3)
P 		69
C 66.8
(-0.6)
P 		54.4
(-3)
P 		66.5
(-0.7)
P 		85.8
(3)
P 		31
avr 65.2
(-0.6) 		48.7
(-3) 		54.1
(-2.2) 		90.4
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 52
(-0.2)
P 		81.1
(3)
P 		26.9
(-3)
P 		39.1
(-1.6)
P 		47.9
(-0.7)
P 		62.1
(0.9)
P 		54
B 96.7
(2.6)
P 		64.9
(-0.4)
P 		40.3
(-2.7)
P 		37.2
(-3)
P 		69.1
(0)
P 		100.4
(3)
P 		63
C 92.4
(2.3)
P 		60.9
(-0.7)
P 		45.1
(-2.2)
P 		36.5
(-3)
P 		44.6
(-2.2)
P 		99.5
(3)
P 		63
avr 80.4
(2.2) 		69
(0.8) 		37.4
(-3) 		37.6
(-3) 		53.9
(-1) 		87.3
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12539
Sequence Type Exemplar sequence
Representative Public ID R11H6.3 NCBI
Target Description R11H6.3 /REP_DB=WormBase Gene ID /WP=CE12774 /TR=O18001 /GB=CAB07647.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074211(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074211 NCBI Caenorhabditis elegans R11H6.3 (R11H6.3) mRNA, complete cds. 11/11 None
SNAP00000042448 ENSEMBL cdna:SNAP chromosome:CEL140:V:14606688:14609051:1 11/11 None
GENEFINDER00000042457 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14606685:14609051:1 11/11 None
R11H6.3 ENSEMBL cdna:known chromosome:CEL140:V:14606496:14609051:1 gene:R11H6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14606495-14609051(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11H6.3
Entrez Gene 187832 Entrez gene
SwissProt O18001 EMBL-EBI
WormBase CE12774 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07647 Hypothetical protein R11H6.3 [Caenorhabditis elegans] ref|NP_506612.1| R11H6.3 [Caenorhabditis elegans] 0.0
blast CAB07647 Hypothetical protein R11H6.3 [Caenorhabditis elegans] ref|NP_506612.1| R11H6.3 [Caenorhabditis elegans] 1.0E-159
blast CAB07647 Hypothetical protein R11H6.3 [Caenorhabditis elegans] ref|NP_506612.1| R11H6.3 [Caenorhabditis elegans] 1.0E-158
blast CAE60866 Hypothetical protein CBG04577 [Caenorhabditis briggsae] 1.0E-143
blast AAF99945 Hypothetical protein F46C8.7 [Caenorhabditis elegans] ref|NP_509275.1| F46C8.7 [Caenorhabditis elegans] 2.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506612.1 1 45-67
R11H6.3 1 45-67
Sequence
Target Sequence 
>C. ELEGANS:178198_AT
cacccttcgagatcatacacacttttttgtgtccctggtttctcaagtcgtgtctagttt
ggaaaaagagcccgcaaagattttggagcacctggatcacattggtcaaagtcatgcgta
tctgaaaagatatggtttcaagtcatcacattgggagaaggtcggagaatattttgtgga
tcatgtggtgatacaggattgcgttcgcggtttccctgaagcatgccgggcctggactgt
actcgtttcatcaattgtggaccggctgcgagcggctccaaggagaggaagcttcctgaa
ctctccatcttcatcaagaagaggaagcatgtgcacatcatcacagttgagcatcaatga
cgaagctccaaaatgtcctttcatgtcgaaatctgcaaacaattcggtgacccgcttgtc
ttgctctgaatccgtgtctcgtcgcggatccattgtacttccagccactacaattgatat
gtcaacgctgaaagatgctcttccaacacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCCTTCGAGATCATACACACTTT 485 199 624 Antisense
CTGGTTTCTCAAGTCGTGTCTAGTT 98 241 658 Antisense
GGAGCACCTGGATCACATTGGTCAA 580 519 708 Antisense
GGTGATACAGGATTGCGTTCGCGGT 707 499 810 Antisense
GGACTGTACTCGTTTCATCAATTGT 194 523 857 Antisense
CATCAATTGTGGACCGGCTGCGAGC 422 213 872 Antisense
AGAGGAAGCTTCCTGAACTCTCCAT 55 69 907 Antisense
GAAGCTCCAAAATGTCCTTTCATGT 442 343 985 Antisense
ATCTGCAAACAATTCGGTGACCCGC 566 33 1014 Antisense
GTACTTCCAGCCACTACAATTGATA 215 459 1078 Antisense
GCTGAAAGATGCTCTTCCAACACCA 199 297 1110 Antisense
Sequence Source Affymetrix Proprietary Database