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[178193_at]

Description C50H2.5 /REP_DB=WormBase Gene ID /WP=CE05483 /TR=Q18763 /GB=CAA98253.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 34.9
(1.6)
A 		32.4
(1.2)
A 		5.8
(-3)
A 		43.5
(3)
A 		38
B 28.8
(-0)
A 		5.9
(-3)
A 		7.4
(-2.8)
A 		51.8
(3)
A 		46
C 26.5
(-0.7)
A 		3.9
(-2.8)
A 		2.3
(-3)
A 		66.1
(3)
A 		64
avr 30.1
(0.1) 		14.1
(-1.9) 		5.2
(-3) 		53.8
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 34.9
(3)
A 		35
(3)
A 		14.8
(-1.3)
A 		6.9
(-3)
A 		11.1
(-2.1)
A 		25.2
(0.9)
A 		28
B 33.4
(2)
A 		18.4
(-0.5)
A 		3.9
(-3)
A 		39
(3)
A 		6.4
(-2.6)
A 		27.5
(1)
A 		35
C 7.8
(-2.3)
A 		22.6
(0.3)
A 		6.7
(-2.5)
A 		3.6
(-3)
A 		22.6
(0.3)
A 		37.8
(3)
A 		34
avr 25.4
(1.7) 		25.3
(1.6) 		8.5
(-3) 		16.5
(-0.8) 		13.4
(-1.6) 		30.2
(3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.7
(3)
A 		7
(-0.1)
A 		1.5
(-3)
A 		6.4
(-0.4)
A 		11
B 9.2
(1.9)
A 		1.5
(-3)
A 		1.7
(-2.9)
A 		11
(3)
A 		10
C 8.8
(1.7)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		11.1
(3)
A 		10
avr 10.2
(3) 		3.2
(-1.7) 		1.3
(-3) 		9.5
(2.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.4
(-0.4)
A 		12.4
(3)
A 		3.2
(-2.2)
A 		1.7
(-3)
A 		3.3
(-2.1)
A 		6.1
(-0.5)
A 		11
B 11.6
(3)
A 		6.1
(-0.1)
A 		0.9
(-3)
A 		10.3
(2.3)
A 		2.6
(-2)
A 		10.2
(2.2)
A 		11
C 2.9
(-1.9)
A 		6.9
(0.1)
A 		1.7
(-2.5)
A 		0.7
(-3)
A 		7.3
(0.3)
A 		12.7
(3)
A 		12
avr 7
(0.9) 		8.5
(2.1) 		1.9
(-3) 		4.2
(-1.2) 		4.4
(-1.1) 		9.7
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178193_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12116
Sequence Type Exemplar sequence
Representative Public ID C50H2.5 NCBI
Target Description C50H2.5 /REP_DB=WormBase Gene ID /WP=CE05483 /TR=Q18763 /GB=CAA98253.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073152 NCBI Caenorhabditis elegans C50H2.5 (C50H2.5) mRNA, complete cds. 11/11 None
SNAP00000033469 ENSEMBL cdna:SNAP chromosome:CEL140:V:9921367:9922372:1 11/11 None
GENEFINDER00000033474 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9919655:9924628:1 11/11 None
C50H2.5 ENSEMBL cdna:known chromosome:CEL140:V:9921352:9922372:1 gene:C50H2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9921351-9922372(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50H2.5
Entrez Gene 183689 Entrez gene
SwissProt Q18763 EMBL-EBI
WormBase CE05483 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98253 Hypothetical protein C50H2.5 [Caenorhabditis elegans] ref|NP_505553.1| C50H2.5 [Caenorhabditis elegans] 1.0E-140
blast CAA98253 Hypothetical protein C50H2.5 [Caenorhabditis elegans] ref|NP_505553.1| C50H2.5 [Caenorhabditis elegans] 1.0E-137
blast CAA98253 Hypothetical protein C50H2.5 [Caenorhabditis elegans] ref|NP_505553.1| C50H2.5 [Caenorhabditis elegans] 1.0E-127
blast CAA98252 Hypothetical protein C50H2.4 [Caenorhabditis elegans] ref|NP_505552.1| C50H2.4 [Caenorhabditis elegans] 1.0E-112
blast CAA98254 Hypothetical protein C50H2.6 [Caenorhabditis elegans] ref|NP_505554.1| C50H2.6 [Caenorhabditis elegans] 2.0E-95
blast CAA98252 Hypothetical protein C50H2.4 [Caenorhabditis elegans] ref|NP_505552.1| C50H2.4 [Caenorhabditis elegans] 2.0E-34
blast CAE62629 Hypothetical protein CBG06759 [Caenorhabditis briggsae] 1.0E-24
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 4.69999980926514
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.0
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.70000004768372
Sequence
Target Sequence 
>C. ELEGANS:178193_AT
ttgggacatgtacaacttcttgggaaaacgcaggcggttctttgttttcttaaaggaaat
cacttcgattcgcaagaaattattcgtcgtggattctacgataaacggcatcacgcattc
cttcaagaacttttcaaaaaagcagagaaaagaagaactggaaaatgttttggatcattg
ggttactgtaaataccctccatcaattgaccaaatcaacgaagatgggttcccaaagagc
ttaataaaacttttgagacattattacgaatcaaagcgtgctgcgaagaaagcgttggat
attgaattagtagcacgtgaaacaggacttcacgaggacgtcatcagggagaaattccaa
agttttcggatggaaataaaaaagaaaacatcagaagcaaagctgctgaaatccacagga
gaaatttctcaaatctcacatcaagaatcaattcaacatgtacagcaataccatttttac
tcctatccaaatttgtatccaagtcctccattgagtgagaatggaaatcttacaactcca
ctcgatcaaccgttgactgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGGACATGTACAACTTCTTGGGA 514 707 187 Antisense
TGGGAAAACGCAGGCGGTTCTTTGT 630 551 207 Antisense
GATTCTACGATAAACGGCATCACGC 555 431 278 Antisense
GCATCACGCATTCCTTCAAGAACTT 269 309 294 Antisense
GGTTACTGTAAATACCCTCCATCAA 355 505 367 Antisense
TACCCTCCATCAATTGACCAAATCA 558 647 379 Antisense
GGACTTCACGAGGACGTCATCAGGG 11 525 511 Antisense
AGCAATACCATTTTTACTCCTATCC 702 75 650 Antisense
CAAATTTGTATCCAAGTCCTCCATT 465 193 674 Antisense
TGGAAATCTTACAACTCCACTCGAT 611 547 708 Antisense
TCCACTCGATCAACCGTTGACTGTC 349 589 723 Antisense
Sequence Source Affymetrix Proprietary Database