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[178192_at]

Description F54C9.9 /REP_DB=WormBase Gene ID /WP=CE20865 /TR=Q20760 /GB=CAA90257.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      4grp_high_8_8 > 57      6grp_total > 67      4grp_total > 62      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 508.6
(3)
P 		280.8
(-1.9)
P 		250.1
(-2.6)
A 		229.2
(-3)
P 		279
B 446.1
(3)
P 		353.9
(-2.7)
P 		409
(0.7)
P 		349.3
(-3)
P 		97
C 255.1
(-3)
P 		327.6
(-0.3)
M 		418.1
(3)
P 		267.2
(-2.6)
P 		163
avr 403.3
(3) 		320.8
(-1.1) 		359.1
(0.8) 		281.9
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 578
1 2 3 4 5 6 range
A 399.1
(-0.8)
P 		351.1
(-3)
P 		461.6
(2)
P 		370.3
(-2.1)
P 		424.9
(0.3)
P 		483.9
(3)
P 		133
B 409
(-1.6)
P 		346.5
(-2.4)
P 		527.4
(-0)
P 		302.7
(-3)
P 		328.7
(-2.7)
P 		752.7
(3)
P 		450
C 362.7
(-2.2)
P 		438.1
(-1.4)
P 		325.4
(-2.6)
P 		427.2
(-1.5)
P 		284.6
(-3)
M 		862.8
(3)
P 		578
avr 390.3
(-2.3) 		378.6
(-2.4) 		438.1
(-1.4) 		366.7
(-2.7) 		346.1
(-3) 		699.8
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 185.2
(3)
P 		61
(-1.9)
P 		65.4
(-1.7)
A 		33.6
(-3)
P 		152
B 142.2
(3)
P 		87.4
(-1.8)
P 		94.8
(-1.2)
P 		74.4
(-3)
P 		68
C 84.4
(-0.7)
P 		94.2
(-0.1)
M 		145.7
(3)
P 		45.1
(-3)
P 		101
avr 137.3
(3) 		80.9
(-0.9) 		102
(0.5) 		51
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 73.6
(-3)
P 		124.9
(2.6)
P 		100.5
(-0)
P 		93.9
(-0.8)
P 		128.2
(3)
P 		117.8
(1.9)
P 		55
B 142.3
(-1.1)
P 		115.3
(-1.9)
P 		128.1
(-1.6)
P 		80.2
(-3)
P 		133.5
(-1.4)
P 		280.7
(3)
P 		201
C 134.4
(-1.5)
P 		133.7
(-1.5)
P 		82.8
(-3)
P 		85.9
(-2.9)
P 		92.1
(-2.7)
M 		288.8
(3)
P 		206
avr 116.8
(-1.7) 		124.6
(-1.4) 		103.8
(-2.3) 		86.7
(-3) 		117.9
(-1.7) 		229.1
(3) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178192_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2709
Sequence Type Exemplar sequence
Representative Public ID F54C9.9 NCBI
Target Description F54C9.9 /REP_DB=WormBase Gene ID /WP=CE20865 /TR=Q20760 /GB=CAA90257.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063414 NCBI Caenorhabditis elegans F54C9.9 (F54C9.9) mRNA, complete cds. 11/11 None
SNAP00000013426 ENSEMBL cdna:SNAP chromosome:CEL140:II:8579020:8581316:1 11/11 None
GENEFINDER00000013454 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8577978:8581316:1 11/11 None
F54C9.9 ENSEMBL cdna:known chromosome:CEL140:II:8577971:8581435:1 gene:F54C9.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8577974-8581313(+) 93.07 100.0
Public Domain and Genome References
Gene Title
Ensembl F54C9.9
Entrez Gene 174374 Entrez gene
SwissProt Q20760 EMBL-EBI
WormBase CE20865 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256910_AT KRR1 family protein at
CANINE_2:CFA.21226.1.S1_S_AT similar to CG5645-PA cfa
CANINE_2:CFAAFFX.27184.1.S1_AT similar to CG5645-PA cfa
DROSOPHILA_2:1639302_AT dm
DROSGENOME1:153460_AT dm
HU35KSUBA:HUM_ALU_AT hypothetical protein FLJ12949 hs
HU35KSUBB:HUM_ALU_AT hypothetical protein FLJ12949 hs
HU35KSUBC:HUM_ALU_AT hypothetical protein FLJ12949 hs
HU35KSUBD:HUM_ALU_AT hypothetical protein FLJ12949 hs
HUGENEFL:HUM_ALU_AT hypothetical protein FLJ12949 hs
HC-G110:HUM_ALU_AT hypothetical protein FLJ12949 hs
HU35KSUBC:RC_AA151699_AT hypothetical protein FLJ12949 hs
HU35KSUBD:RC_AA436844_AT hypothetical protein FLJ12949 hs
HG-U133A:218798_AT hypothetical protein FLJ12949 hs
HG-U133_PLUS_2:218798_AT hypothetical protein FLJ12949 hs
HG-U133A_2:218798_AT hypothetical protein FLJ12949 hs
U133_X3P:G12711671_3P_X_AT hypothetical protein FLJ12949 hs
U133_X3P:G12711671_3P_S_AT hypothetical protein FLJ12949 hs
U133_X3P:G12711671_3P_AT hypothetical protein FLJ12949 hs
U133_X3P:HS.104938.1.A1_3P_AT hypothetical protein FLJ12949 hs
U133_X3P:218798_3P_AT hypothetical protein FLJ12949 hs
HG-U133_PLUS_2:227587_AT hypothetical protein FLJ12949 hs
HG-U133B:227587_AT hypothetical protein FLJ12949 hs
HG-U95B:43096_AT hypothetical protein FLJ12949 hs
HG-U95B:43415_S_AT hypothetical protein FLJ12949 hs
HG-U95B:57749_S_AT hypothetical protein FLJ12949 hs
MG-U74BV2:108506_AT cDNA sequence BC021438 mm
MOE430A:1424788_AT cDNA sequence BC021438 mm
MOUSE430A_2:1424788_AT cDNA sequence BC021438 mm
MOUSE430_2:1424788_AT cDNA sequence BC021438 mm
MOE430B:1442872_AT cDNA sequence BC021438 mm
MOUSE430_2:1442872_AT cDNA sequence BC021438 mm
MG-U74CV2:131831_AT CDNA sequence BC021438 (BC021438), mRNA mm
MG-U74CV2:139159_AT CDNA sequence BC021438 (BC021438), mRNA mm
MOE430B:1420135_AT CDNA sequence BC021438 (BC021438), mRNA mm
MOUSE430_2:1420135_AT CDNA sequence BC021438 (BC021438), mRNA mm
MOE430B:1449743_A_AT CDNA sequence BC021438 (BC021438), mRNA mm
MOUSE430_2:1449743_A_AT CDNA sequence BC021438 (BC021438), mRNA mm
MU19KSUBC:TC40076_AT CDNA sequence BC021438 (BC021438), mRNA mm
YEAST_2:1774693_AT Essential nucleolar protein required for 40S ribosome biogenesis; physically and functionally interacts with Krr1p Sc
Protein Similarities
Method ID Description E-Value
blast CAA90257 Hypothetical protein F54C9.9 [Caenorhabditis elegans] ref|NP_495815.1| F54C9.9 [Caenorhabditis elegans] 0.0
blast CAE57579 Hypothetical protein CBG00558 [Caenorhabditis briggsae] 0.0
blast CAE57579 Hypothetical protein CBG00558 [Caenorhabditis briggsae] 1.0E-163
blast EAA03955 ENSANGP00000009538 [Anopheles gambiae str. PEST] ref|XP_308526.2| ENSANGP00000009538 [Anopheles gambiae str. PEST] 3.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR007851 EMBL-EBI Krr1 1.0E-126
Pfam IPR007851 EMBL-EBI Krr1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:178192_AT
gaacgtcaactgaacgcgtgggcatcattgaaaaaagttaccgcttatcgtacatcacag
gaagagtttttcgaccggaaagcgtatcaaagaaaggctgaagatgttaacaaaaagaaa
cgaattctttcaatcgattttggagggaaaaaatcactgaaaagaaaaatggaagacgaa
caaatggagaaggagatggccgagatgaatgatcaaaatgataacaccgaagaagatgct
gaaaagaagaaaaagaagaagaagagaggaaagaagaaggttaaacttactgagactgaa
aatcccgaagaaaatatgacggaagccattgaaaatgaagtcgaagaagttgacaagcaa
gagcaattacctgtgccgcaacctgaagaacccgaagctgctcacgaagctccaaaagaa
gaaaagaagaagacaagaaagaggaataagaataagaacaacgtaatcgctgaaaagttc
ggacaaggaatgacggattctcgcgtgaaagcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTCAACTGAACGCGTGGGCAT 93 349 1672 Antisense
GAACGCGTGGGCATCATTGAAAAAA 534 347 1683 Antisense
AGTTACCGCTTATCGTACATCACAG 668 57 1707 Antisense
ATCACAGGAAGAGTTTTTCGACCGG 243 27 1725 Antisense
TTTCGACCGGAAAGCGTATCAAAGA 6 543 1740 Antisense
ACTTACTGAGACTGAAAATCCCGAA 66 101 1956 Antisense
GCAAGAGCAATTACCTGTGCCGCAA 587 319 2028 Antisense
TACCTGTGCCGCAACCTGAAGAACC 92 649 2039 Antisense
TGAAGAACCCGAAGCTGCTCACGAA 470 573 2055 Antisense
GAAGCTGCTCACGAAGCTCCAAAAG 338 343 2065 Antisense
GACGGATTCTCGCGTGAAAGCTTAT 635 375 2163 Antisense
Sequence Source Affymetrix Proprietary Database