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[178191_at]

Description F35C5.3 /REP_DB=WormBase Gene ID /WP=CE15943 /TR=O45438 /GB=CAB03052.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 1.5
(-3)
A 		2.8
(-2)
A 		4.4
(-0.7)
A 		9
(3)
A 		8
B 2.5
(-2.9)
A 		4.4
(-2.2)
A 		19.2
(3)
A 		2.2
(-3)
A 		17
C 5.1
(-2.8)
A 		16.9
(-0.6)
A 		4.3
(-3)
A 		35.8
(3)
A 		32
avr 3
(-3) 		8
(-0.6) 		9.3
(-0) 		15.7
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 14.1
(1.7)
A 		2.1
(-2.8)
A 		17.6
(3)
A 		17.1
(2.8)
A 		3.2
(-2.4)
A 		1.6
(-3)
A 		16
B 3.5
(2.5)
A 		3.7
(3)
A 		2.7
(0.5)
A 		3
(1.3)
A 		1.6
(-2.3)
A 		1.3
(-3)
A 		2
C 4.3
(3)
A 		3.7
(1.8)
A 		1.7
(-2.4)
A 		1.6
(-2.6)
A 		1.4
(-3)
A 		2.6
(-0.5)
A 		3
avr 7.3
(3) 		3.2
(-1.5) 		7.3
(3) 		7.2
(2.9) 		2.1
(-2.7) 		1.8
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.6
(-3)
A 		0.6
(-3)
A 		1.1
(1.3)
A 		1.3
(3)
A 		1
B 0.8
(-2.6)
A 		1.1
(-2.1)
A 		4.5
(3)
A 		0.5
(-3)
A 		4
C 1.7
(-2.7)
A 		4.9
(1.5)
A 		1.5
(-3)
A 		6
(3)
A 		5
avr 1
(-3) 		2.2
(1.5) 		2.4
(2.3) 		2.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.6
(0.4)
A 		0.8
(-2.4)
A 		3.8
(2.2)
A 		4.3
(3)
A 		1
(-2.1)
A 		0.4
(-3)
A 		4
B 1.2
(3)
A 		1.2
(3)
A 		0.6
(-2.1)
A 		0.8
(-0.4)
A 		0.7
(-1.3)
A 		0.5
(-3)
A 		1
C 1.6
(3)
A 		1.1
(0.7)
A 		0.4
(-2.5)
A 		0.3
(-3)
A 		0.4
(-2.5)
A 		0.9
(-0.2)
A 		1
avr 1.8
(3) 		1
(-1) 		1.6
(2) 		1.8
(3) 		0.7
(-2.5) 		0.6
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178191_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3840
Sequence Type Exemplar sequence
Representative Public ID F35C5.3 NCBI
Target Description F35C5.3 /REP_DB=WormBase Gene ID /WP=CE15943 /TR=O45438 /GB=CAB03052.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064338 NCBI Caenorhabditis elegans F35C5.3 (F35C5.3) mRNA, complete cds. 11/11 None
GENEFINDER00000007554 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12888639:12891849:1 11/11 None
F35C5.3 ENSEMBL cdna:known chromosome:CEL140:II:12888675:12890357:1 gene:F35C5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007544 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12888671-12890354(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35C5.3
Entrez Gene 174925 Entrez gene
SwissProt O45438 EMBL-EBI
WormBase CE15943 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03052 Hypothetical protein F35C5.3 [Caenorhabditis elegans] ref|NP_496739.1| F35C5.3 [Caenorhabditis elegans] 1.0E-171
blast CAB03052 Hypothetical protein F35C5.3 [Caenorhabditis elegans] ref|NP_496739.1| F35C5.3 [Caenorhabditis elegans] 1.0E-162
blast AAS65018 CG33265-PA [Drosophila melanogaster] ref|NP_996064.1| CG33265-PA [Drosophila melanogaster] 8.0E-21
blast AAS65018 CG33265-PA [Drosophila melanogaster] ref|NP_996064.1| CG33265-PA [Drosophila melanogaster] 2.0E-20
blast EAL87607 antigenic cell wall galactomannoprotein, putative [Aspergillus fumigatus Af293] ref|XP_749645.1| antigenic cell wall galactomannoprotein [Aspergillus fumigatus Af293] 7.0E-20
blast EAL87607 antigenic cell wall galactomannoprotein, putative [Aspergillus fumigatus Af293] ref|XP_749645.1| antigenic cell wall galactomannoprotein [Aspergillus fumigatus Af293] 1.0E-19
Sequence
Target Sequence 
>C. ELEGANS:178191_AT
gtatcaccggacacaactgtatcacaggaaagtactgtatcgcaggatactacggtatcg
caggagactactctatcgcaggagactactgtatcacaggagactactgtatcacaggat
actactgtatcacaggagactacggcatcacaggatacaactgtatcacaggatactact
gtatcacaggatactactgtagtgccgcaggagactactgtagaagcaaccaaagcttct
gaagctactgaagagaacgggactactgctgtgactcctggagaatcggacccttgcgac
actacggaagcacctactggaggatcaacagtgggagaatcggagccttgtgatactacg
gaggcatcagaaccaactggtcatacggaccaggcggaaacagtaaccgatccagcgtcc
caggcgacggcttctgctacgattattggtggtgtagatcagactggtagcactaatttg
gaagccacaacggagcagatctgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCACCGGACACAACTGTATCAC 104 455 580 Antisense
CGCAGGAGACTACTCTATCGCAGGA 683 251 638 Antisense
ATCACAGGAGACTACGGCATCACAG 545 27 708 Antisense
AGAACGGGACTACTGCTGTGACTCC 348 73 833 Antisense
TCCTGGAGAATCGGACCCTTGCGAC 427 593 855 Antisense
CGACACTACGGAAGCACCTACTGGA 91 251 876 Antisense
GAATCGGAGCCTTGTGATACTACGG 18 329 916 Antisense
GGAGGCATCAGAACCAACTGGTCAT 518 513 939 Antisense
GGAAACAGTAACCGATCCAGCGTCC 71 529 975 Antisense
CGACGGCTTCTGCTACGATTATTGG 671 249 1004 Antisense
GAAGCCACAACGGAGCAGATCTGCA 317 345 1060 Antisense
Sequence Source Affymetrix Proprietary Database