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[178188_at]

Description ZK512.9 /REP_DB=WormBase Gene ID /WP=CE23462 /TR=Q9NA23 /GB=CAB76721.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 03      6grp_cgc > 80      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 3.1
(-3)
A 		3.7
(-2.9)
A 		5.4
(-2.8)
A 		66.6
(3)
A 		64
B 22.4
(0.3)
A 		13.4
(-1.4)
A 		4.7
(-3)
A 		37.2
(3)
A 		33
C 22.8
(-1.9)
A 		8.2
(-2.8)
A 		4.1
(-3)
A 		106.6
(3)
P 		103
avr 16.1
(-2) 		8.4
(-2.7) 		4.7
(-3) 		70.1
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 22.9
(-0.8)
A 		5.8
(-2.7)
A 		56.7
(3)
A 		20.2
(-1.1)
A 		47.3
(1.9)
A 		3
(-3)
A 		54
B 54.6
(2.5)
A 		38.9
(-0.7)
A 		57.2
(3)
A 		27.4
(-3)
A 		31.7
(-2.1)
A 		31.1
(-2.3)
P 		30
C 54.3
(3)
A 		38.6
(0.6)
A 		15.2
(-3)
A 		29
(-0.9)
A 		20.4
(-2.2)
A 		24.4
(-1.6)
A 		39
avr 43.9
(3) 		27.8
(-1) 		43
(2.8) 		25.5
(-1.5) 		33.1
(0.3) 		19.5
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.1
(-2.8)
A 		0.8
(-3)
A 		1.4
(-2.6)
A 		9.7
(3)
A 		9
B 7.1
(2.3)
A 		3.3
(-1.1)
A 		1.1
(-3)
A 		7.9
(3)
A 		7
C 7.6
(-0.8)
A 		2.4
(-2.6)
A 		1.4
(-3)
A 		18
(3)
P 		17
avr 5.3
(-0.7) 		2.2
(-2.5) 		1.3
(-3) 		11.9
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.2
(-1.5)
A 		2.1
(-2.4)
A 		12.3
(2.1)
A 		5.1
(-1.1)
A 		14.3
(3)
A 		0.7
(-3)
A 		14
B 19
(3)
A 		12.9
(-0.1)
A 		13.9
(0.4)
A 		7.3
(-3)
A 		12.9
(-0.1)
A 		11.6
(-0.8)
P 		12
C 20.1
(3)
A 		11.8
(-0.1)
A 		3.9
(-3)
A 		5.8
(-2.3)
A 		6.6
(-2)
A 		8.2
(-1.4)
A 		16
avr 14.4
(3) 		8.9
(-1) 		10
(-0.2) 		6.1
(-3) 		11.3
(0.8) 		6.8
(-2.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178188_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7304
Sequence Type Exemplar sequence
Representative Public ID ZK512.9 NCBI
Target Description ZK512.9 /REP_DB=WormBase Gene ID /WP=CE23462 /TR=Q9NA23 /GB=CAB76721.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066619(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066619 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-11) (grl-11) mRNA, complete cds. 11/11 None
GENEFINDER00000002540 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9117345:9118270:-1 11/11 None
ZK512.9 ENSEMBL cdna:known chromosome:CEL140:III:9117345:9118270:-1 gene:ZK512.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9117340-9118266(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-11
Ensembl ZK512.9
Entrez Gene 191341 Entrez gene
SwissProt Q9NA23 EMBL-EBI
WormBase CE23462 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76721 Hypothetical protein ZK512.9 [Caenorhabditis elegans] ref|NP_499020.1| GRound-Like (grd related) family member (grl-11) [Caenorhabditis elegans] 7.0E-76
blast CAB76721 Hypothetical protein ZK512.9 [Caenorhabditis elegans] ref|NP_499020.1| GRound-Like (grd related) family member (grl-11) [Caenorhabditis elegans] 6.0E-72
blast CAE62769 Hypothetical protein CBG06938 [Caenorhabditis briggsae] 7.0E-55
blast CAE62769 Hypothetical protein CBG06938 [Caenorhabditis briggsae] 6.0E-51
blast CAE75241 Hypothetical protein CBG23193 [Caenorhabditis briggsae] 7.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 3.9E-18
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 3.0E-28
Sequence
Target Sequence 
>C. ELEGANS:178188_AT
ttttctccgtatttatcggccttcaaattactgtggaaatcagtggaattcaattaattg
acggaagcacaaacgtaacagtttttcacaacgactacacagattcatattcaacttcgc
tcattcaaaatccgaatataagaaccaaacctattccaagatcaagaaaagatgatgatt
gttcggatgaacttttgagaaaagttatgaatgagcatataagtgacgaaggaatgacag
aatcgaagcgagcaattcatgaagctgctcgtcgagatttcgaaggaacctggagtatta
tttgtgctccatgtgcattttcgtatttggctcatgcacaagattactgtattcattcaa
ggcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTCCGTATTTATCGGCCTTCA 102 677 26 Antisense
TTATCGGCCTTCAAATTACTGTGGA 125 671 38 Antisense
GTAACAGTTTTTCACAACGACTACA 76 445 100 Antisense
CAACGACTACACAGATTCATATTCA 699 187 114 Antisense
TTCATATTCAACTTCGCTCATTCAA 115 689 129 Antisense
GAACCAAACCTATTCCAAGATCAAG 569 345 167 Antisense
GAAGCTGCTCGTCGAGATTTCGAAG 422 343 286 Antisense
GAGTATTATTTGTGCTCCATGTGCA 509 399 318 Antisense
CATGTGCATTTTCGTATTTGGCTCA 122 211 335 Antisense
GTATTTGGCTCATGCACAAGATTAC 75 453 348 Antisense
AGATTACTGTATTCATTCAAGGCAT 419 65 366 Antisense
Sequence Source Affymetrix Proprietary Database