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[178187_at]

Description C50H2.4 /REP_DB=WormBase Gene ID /WP=CE05482 /TR=Q18762 /GB=CAA98252.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 40.1
(-0.1)
P 		10
(-3)
A 		21.7
(-1.9)
A 		72.9
(3)
A 		63
B 40.3
(3)
A 		28.9
(0.5)
A 		12.9
(-3)
A 		39.9
(2.9)
A 		27
C 42.1
(-0.2)
A 		7.8
(-3)
A 		25.9
(-1.5)
A 		80.2
(3)
P 		72
avr 40.8
(0.1) 		15.6
(-3) 		20.2
(-2.4) 		64.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 71.8
(3)
M 		23.7
(-2)
A 		33.6
(-1)
A 		36.8
(-0.7)
A 		42.9
(-0)
A 		14.4
(-3)
A 		57
B 43.1
(0.3)
P 		39.5
(-0.6)
A 		53.7
(3)
A 		40.4
(-0.4)
M 		37.6
(-1.1)
A 		30.2
(-3)
M 		24
C 25.3
(-1.6)
A 		66.5
(3)
P 		43.6
(0.5)
A 		47.1
(0.8)
A 		20
(-2.2)
A 		12.6
(-3)
A 		54
avr 46.7
(3) 		43.2
(2.2) 		43.6
(2.3) 		41.4
(1.8) 		33.5
(0.1) 		19.1
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 14.6
(3)
P 		2.2
(-3)
A 		5.7
(-1.3)
A 		10.7
(1.1)
A 		12
B 12.9
(3)
A 		7.1
(-0.5)
A 		3
(-3)
A 		8.5
(0.3)
A 		10
C 13.9
(3)
A 		2.2
(-3)
A 		9
(0.5)
A 		13.5
(2.8)
P 		12
avr 13.8
(3) 		3.8
(-3) 		5.9
(-1.7) 		10.9
(1.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 13.2
(3)
M 		8.4
(0)
A 		7.3
(-0.6)
A 		9.3
(0.6)
A 		12.9
(2.8)
A 		3.5
(-3)
A 		10
B 15
(2.6)
P 		13.1
(0.1)
A 		13
(0)
A 		10.7
(-3)
M 		15.3
(3)
A 		11.2
(-2.3)
M 		5
C 9.4
(-1.1)
A 		20.3
(3)
P 		11.1
(-0.4)
A 		9.5
(-1)
A 		6.5
(-2.1)
A 		4.2
(-3)
A 		16
avr 12.5
(1.9) 		13.9
(3) 		10.5
(0.3) 		9.8
(-0.2) 		11.6
(1.2) 		6.3
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11995
Sequence Type Exemplar sequence
Representative Public ID C50H2.4 NCBI
Target Description C50H2.4 /REP_DB=WormBase Gene ID /WP=CE05482 /TR=Q18762 /GB=CAA98252.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073151(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073151 NCBI Caenorhabditis elegans C50H2.4 (C50H2.4) mRNA, complete cds. 11/11 None
SNAP00000033468 ENSEMBL cdna:SNAP chromosome:CEL140:V:9919655:9920527:1 11/11 None
GENEFINDER00000033474 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9919655:9924628:1 9/11 None
C50H2.4 ENSEMBL cdna:known chromosome:CEL140:V:9919557:9920527:1 gene:C50H2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9919556-9920527(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50H2.4
Entrez Gene 183688 Entrez gene
SwissProt Q18762 EMBL-EBI
WormBase CE05482 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98252 Hypothetical protein C50H2.4 [Caenorhabditis elegans] ref|NP_505552.1| C50H2.4 [Caenorhabditis elegans] 1.0E-158
blast CAA98252 Hypothetical protein C50H2.4 [Caenorhabditis elegans] ref|NP_505552.1| C50H2.4 [Caenorhabditis elegans] 1.0E-149
blast CAA98253 Hypothetical protein C50H2.5 [Caenorhabditis elegans] ref|NP_505553.1| C50H2.5 [Caenorhabditis elegans] 1.0E-127
blast CAA98252 Hypothetical protein C50H2.4 [Caenorhabditis elegans] ref|NP_505552.1| C50H2.4 [Caenorhabditis elegans] 1.0E-112
blast CAA98254 Hypothetical protein C50H2.6 [Caenorhabditis elegans] ref|NP_505554.1| C50H2.6 [Caenorhabditis elegans] 2.0E-95
blast CAA98253 Hypothetical protein C50H2.5 [Caenorhabditis elegans] ref|NP_505553.1| C50H2.5 [Caenorhabditis elegans] 1.0E-37
blast CAE62629 Hypothetical protein CBG06759 [Caenorhabditis briggsae] 1.0E-26
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 4.69999980926514
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.70000004768372
Sequence
Target Sequence 
>C. ELEGANS:178187_AT
attgcaagccatcctttgttttctaaatttgaagtattcggacggtctaacaattttggc
tcatggattctacgatgagaagcaccatacatttctccaacagctctacgtcagaattga
agaagacaagaatggaaaaaacgttaaagagcaagagtattgtccctttccaccgtcgat
tgacccaaaaggaaaagatgggttgccgaacagtttatccaaattttttcgtgattatta
tttcaaaagacgacttttgaaaaaacgctttgatatcaagagtgtctctgagcaaaccgg
attgcgtcaagatttcatagaagcaagattcgaagagcaccgaaaatcgatttcaaaacc
tcgtcataggagcctcaaagatagaagaagcaccgacacaaaagacaaaacttactgcaa
cagtgacaaaaacggctgtattgaatcaaaagtaatgatatccacaattgaatcaaaaga
aaactttaacgaacttcattatcagtacttcaacgaaatctattttccaagtccaccaat
gacaccaaaacctgtgttcacttacattcccccattaaatcaaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCAAGCCATCCTTTGTTTTCTA 458 5 213 Antisense
TCGGACGGTCTAACAATTTTGGCTC 235 605 250 Antisense
AGAAGCACCATACATTTCTCCAACA 203 75 290 Antisense
TTCTCCAACAGCTCTACGTCAGAAT 58 693 305 Antisense
AGAGCAAGAGTATTGTCCCTTTCCA 301 69 360 Antisense
TCCACCGTCGATTGACCCAAAAGGA 29 589 381 Antisense
ATGGGTTGCCGAACAGTTTATCCAA 4 51 410 Antisense
GAGTGTCTCTGAGCAAACCGGATTG 263 401 492 Antisense
AAAACCTCGTCATAGGAGCCTCAAA 529 129 567 Antisense
CAAAACCTGTGTTCACTTACATTCC 178 191 758 Antisense
TACATTCCCCCATTAAATCAACCAC 626 643 775 Antisense
Sequence Source Affymetrix Proprietary Database