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[178185_s_at]

Description ZC247.2 /REP_DB=WormBase Gene ID /WP=CE15148 /TR=Q94379 /GB=CAB02309.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 61      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 405.1
(2.7)
P 		416.2
(3)
P 		343.8
(0.9)
P 		205.8
(-3)
P 		210
B 440.7
(3)
P 		409.4
(2.3)
P 		377.8
(1.5)
P 		180.7
(-3)
P 		260
C 441.4
(3)
P 		357.9
(0.7)
P 		412.8
(2.2)
P 		220.6
(-3)
P 		221
avr 429.1
(3) 		394.5
(2.1) 		378.1
(1.7) 		202.4
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 429
1 2 3 4 5 6 range
A 544.5
(2.6)
P 		571.9
(3)
P 		518.4
(2.2)
P 		465.5
(1.4)
P 		293.8
(-1.2)
P 		174.6
(-3)
P 		397
B 518.2
(1.9)
P 		590.7
(3)
P 		584.3
(2.9)
P 		448.2
(0.8)
P 		294.7
(-1.6)
P 		207.3
(-3)
P 		383
C 445.7
(0.9)
P 		599.4
(3)
P 		561.3
(2.5)
P 		528.8
(2)
P 		295.5
(-1.2)
P 		170.2
(-3)
P 		429
avr 502.8
(1.7) 		587.3
(3) 		554.7
(2.5) 		480.8
(1.4) 		294.7
(-1.4) 		184
(-3) 		403
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 147.5
(3)
P 		90.4
(0.1)
P 		89.9
(0.1)
P 		30.1
(-3)
P 		117
B 140.5
(3)
P 		101.1
(0.7)
P 		87.5
(-0.1)
P 		38.5
(-3)
P 		102
C 146.1
(3)
P 		102.9
(0.6)
P 		143.9
(2.9)
P 		37.2
(-3)
P 		109
avr 144.7
(3) 		98.1
(0.4) 		107.1
(0.9) 		35.3
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 100.4
(-0.8)
P 		203.4
(3)
P 		112.9
(-0.4)
P 		118.1
(-0.2)
P 		88.7
(-1.3)
P 		42.5
(-3)
P 		161
B 180.3
(2.2)
P 		196.6
(3)
P 		141.9
(0.2)
P 		118.7
(-0.9)
P 		119.7
(-0.9)
P 		77.3
(-3)
P 		119
C 165.2
(2.2)
P 		182.9
(3)
P 		142.9
(1.1)
P 		106.3
(-0.7)
P 		95.6
(-1.2)
P 		57
(-3)
P 		126
avr 148.6
(1) 		194.3
(3) 		132.6
(0.3) 		114.4
(-0.5) 		101.3
(-1.1) 		58.9
(-3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178185_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1155
Sequence Type Exemplar sequence
Representative Public ID ZC247.2 NCBI
Target Description ZC247.2 /REP_DB=WormBase Gene ID /WP=CE15148 /TR=Q94379 /GB=CAB02309.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060296 NCBI Caenorhabditis elegans ZC247.2 (ZC247.2) mRNA, complete cds. 11/11 None
SNAP00000007176 ENSEMBL cdna:SNAP chromosome:CEL140:I:10263907:10269443:-1 11/11 None
GENEFINDER00000007180 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10263907:10270225:-1 11/11 None
ZC247.2 ENSEMBL cdna:known chromosome:CEL140:I:10263754:10270328:-1 gene:ZC247.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10263837-10270156(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC247.2
Entrez Gene 172894 Entrez gene
SwissProt Q94379 EMBL-EBI
WormBase CE15148 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02309 Hypothetical protein ZC247.2 [Caenorhabditis elegans] ref|NP_492697.1| ZC247.2 [Caenorhabditis elegans] 0.0
blast CAE66863 Hypothetical protein CBG12237 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178185_S_AT
tgctggacaacttctcaattctggttactataagttattggaaaggtccgataaactgct
gatgacacttcaaagaaaagttgtcagtgatccaggtcttcattacgctacaagtgtact
cactaatattcaaatgcatattttgaatccagttgatatcatgagagcggttcttgatga
aggtgtctgttgtttcccttatggagtgattttggataaaacgtttattttattggacaa
agttgaagcgatgctccatggttcctatgaggaagatgttcactgggagcctgtagctaa
acttgccaaaaaagcagcttctcattaccgtggaaaccttgaacgtgttatggaagaaag
aatgggtgaaaatcttcgtctgaaagctgctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGGACAACTTCTCAATTCTGGT 409 583 1464 Antisense
GGAAAGGTCCGATAAACTGCTGATG 309 527 1503 Antisense
AGTTGTCAGTGATCCAGGTCTTCAT 611 63 1542 Antisense
CCAGGTCTTCATTACGCTACAAGTG 151 269 1555 Antisense
GAGCGGTTCTTGATGAAGGTGTCTG 504 385 1628 Antisense
GTGTCTGTTGTTTCCCTTATGGAGT 135 487 1646 Antisense
GTTGAAGCGATGCTCCATGGTTCCT 164 437 1705 Antisense
GGAAGATGTTCACTGGGAGCCTGTA 696 531 1734 Antisense
GGGAGCCTGTAGCTAAACTTGCCAA 500 493 1748 Antisense
GCAGCTTCTCATTACCGTGGAAACC 669 313 1777 Antisense
AAATCTTCGTCTGAAAGCTGCTCAA 68 119 1833 Antisense
Sequence Source Affymetrix Proprietary Database