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[178184_at]

Description K03D7.4 /REP_DB=WormBase Gene ID /WP=CE18845 /TR=O45650 /GB=CAB04559.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 0      6grp_cgc > 95      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 9.3
(-1.6)
A 		8
(-2.2)
A 		18.9
(3)
A 		6.3
(-3)
A 		13
B 20.1
(-1.4)
A 		26.1
(-0.5)
A 		50.7
(3)
A 		8.9
(-3)
A 		42
C 26.7
(-0.6)
A 		1.6
(-3)
A 		2.7
(-2.9)
A 		63.4
(3)
P 		62
avr 18.7
(-0.1) 		11.9
(-3) 		24.1
(2.1) 		26.2
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 7.3
(-1.4)
A 		3.1
(-3)
A 		18.8
(3)
A 		9.5
(-0.6)
A 		4.8
(-2.4)
A 		10.1
(-0.3)
A 		16
B 28.3
(3)
A 		8.9
(-1.8)
A 		4.1
(-3)
A 		17.5
(0.3)
A 		20.1
(1)
A 		16.4
(0)
A 		24
C 5.1
(-2.9)
A 		16.5
(-1.7)
A 		4.4
(-3)
A 		58.4
(3)
A 		6
(-2.8)
A 		21.9
(-1.1)
A 		54
avr 13.6
(-1.6) 		9.5
(-2.9) 		9.1
(-3) 		28.5
(3) 		10.3
(-2.6) 		16.1
(-0.8) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.4
(0.8)
A 		1.7
(-1.8)
A 		4.9
(3)
A 		0.9
(-3)
A 		4
B 6.4
(-0.2)
A 		6.4
(-0.2)
A 		11.7
(3)
A 		1.9
(-3)
A 		10
C 8.8
(1.9)
A 		0.5
(-3)
A 		0.9
(-2.8)
A 		10.7
(3)
P 		10
avr 6.2
(3) 		2.9
(-3) 		5.8
(2.3) 		4.5
(-0.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.3
(-2.6)
A 		1.1
(-3)
A 		4.1
(3)
A 		2.4
(-0.4)
A 		1.5
(-2.2)
A 		2.5
(-0.2)
A 		3
B 9.8
(3)
A 		3
(-1.6)
A 		1
(-3)
A 		4.6
(-0.5)
A 		8.2
(1.9)
A 		6.1
(0.5)
A 		9
C 1.9
(-2.5)
A 		5
(-0.8)
A 		1.1
(-3)
A 		11.7
(3)
A 		2
(-2.5)
A 		7.3
(0.5)
A 		11
avr 4.3
(0.2) 		3
(-1.7) 		2.1
(-3) 		6.2
(3) 		3.9
(-0.4) 		5.3
(1.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13445
Sequence Type Exemplar sequence
Representative Public ID K03D7.4 NCBI
Target Description K03D7.4 /REP_DB=WormBase Gene ID /WP=CE18845 /TR=O45650 /GB=CAB04559.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075033(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075033 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-261) (srh-261) mRNA, complete cds. 11/11 A 
K03D7.4 ENSEMBL cdna:known chromosome:CEL140:V:17499995:17501550:1 gene:K03D7.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17499994-17501550(+) 100.0 100.0
chrV:17278465-17280847(+) 94.28 94.28
Public Domain and Genome References
Gene Title
Gene Symbol srh-261
Ensembl K03D7.4
Entrez Gene 186944 Entrez gene
SwissProt O45650 EMBL-EBI
WormBase CE18845 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04559 Hypothetical protein K03D7.4 [Caenorhabditis elegans] ref|NP_507434.1| Serpentine Receptor, class H family member (srh-261) [Caenorhabditis elegans] 0.0
blast T23587 hypothetical protein K10G4.7 - Caenorhabditis elegans 1.0E-163
blast CAB03318 Hypothetical protein T06E6.9 [Caenorhabditis elegans] ref|NP_506834.1| Serpentine Receptor, class H family member (srh-265) [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507434.1 7 10-29,50-72,87-109,130-149,190-212,233-255,270-289
K03D7.4 7 10-29,50-72,87-109,130-149,190-212,233-255,270-289
Sequence
Target Sequence 
>C. ELEGANS:178184_AT
cctgatgatcagttaacggctattgatatagcatttaagcaagttccaagcctccctgcc
gagcttaaatccatgaacttcttcatttgggcaaaagattatcaagtttttttgaaatct
ttactgttcatcactatctttgagcttattcaattcgttcccctaattatgttaaccgat
tggaatgtgaggacatctatcaaaaaatcaacgcaatcccgacagaccatgcaacttcaa
ctaaaatttctaatgactctttatgcgcagagcggtgcgttcttcctggcttgtttcact
ccttatgtttatatattgtactcttgttttactaattattataatccaattgcaaacaac
ttcatattcattttcgtggcgtctcgcgagtccatgtgcactttaatcctgctcttcgca
tacaaaccgtataaaaaagcagtgatcagtatcttccgagaactattaccctcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGATGATCAGTTAACGGCTATTG 656 265 460 Antisense
ATTTAAGCAAGTTCCAAGCCTCCCT 682 15 492 Antisense
CTCCCTGCCGAGCTTAAATCCATGA 354 229 511 Antisense
AAATCTTTACTGTTCATCACTATCT 704 117 574 Antisense
ACTGTTCATCACTATCTTTGAGCTT 10 99 582 Antisense
CTTTGAGCTTATTCAATTCGTTCCC 607 223 597 Antisense
AAAATCAACGCAATCCCGACAGACC 646 133 663 Antisense
AGACCATGCAACTTCAACTAAAATT 363 1 683 Antisense
TCGCGAGTCCATGTGCACTTTAATC 223 599 843 Antisense
AAGCAGTGATCAGTATCTTCCGAGA 358 151 896 Antisense
TCTTCCGAGAACTATTACCCTCTTG 559 615 911 Antisense
Sequence Source Affymetrix Proprietary Database