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[178183_at]

Description K08C9.5 /REP_DB=WormBase Gene ID /WP=CE18861 /TR=Q9XUT7 /GB=CAB04584.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 11.6
(-1.8)
A 		11.6
(-1.8)
A 		7.9
(-3)
A 		25.7
(3)
A 		18
B 5.6
(-3)
A 		12.7
(3)
A 		6.1
(-2.6)
A 		5.6
(-3)
A 		7
C 12.4
(1)
A 		5.1
(-3)
A 		8.6
(-1.1)
A 		16
(3)
A 		11
avr 9.9
(-1.3) 		9.8
(-1.3) 		7.5
(-3) 		15.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.1
(-2.1)
A 		16
(3)
A 		5.6
(-3)
A 		7.1
(-2.1)
A 		9.9
(-0.5)
A 		5.8
(-2.9)
A 		10
B 31.3
(3)
A 		8.2
(-2.1)
A 		10.8
(-1.5)
A 		14.1
(-0.8)
A 		9.3
(-1.9)
A 		4.2
(-3)
A 		27
C 12.9
(-1.3)
A 		7
(-3)
A 		12.3
(-1.5)
A 		28.1
(3)
A 		8.3
(-2.6)
A 		10.6
(-2)
A 		21
avr 17.1
(3) 		10.4
(-0.9) 		9.6
(-1.4) 		16.4
(2.6) 		9.2
(-1.6) 		6.9
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4.2
(3)
A 		2.5
(-1.9)
A 		2.1
(-3)
A 		3.8
(1.9)
A 		2
B 1.8
(-1.1)
A 		3.1
(3)
A 		1.4
(-2.4)
A 		1.2
(-3)
A 		2
C 4.1
(3)
A 		1.5
(-3)
A 		3
(0.5)
A 		2.7
(-0.2)
A 		3
avr 3.4
(3) 		2.4
(-2) 		2.2
(-3) 		2.6
(-1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(-2.9)
A 		5.7
(3)
A 		1.2
(-3)
A 		1.8
(-2.2)
A 		3
(-0.6)
A 		1.4
(-2.7)
A 		5
B 10.9
(3)
A 		2.7
(-2.2)
A 		2.6
(-2.3)
A 		3.7
(-1.6)
A 		3.8
(-1.5)
A 		1.5
(-3)
A 		9
C 4.8
(1.6)
A 		2.1
(-3)
A 		3.1
(-1.3)
A 		5.6
(3)
A 		2.7
(-2)
A 		3.5
(-0.6)
A 		4
avr 5.7
(3) 		3.5
(-0.7) 		2.3
(-2.7) 		3.7
(-0.3) 		3.2
(-1.2) 		2.1
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178183_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2131
Sequence Type Exemplar sequence
Representative Public ID K08C9.5 NCBI
Target Description K08C9.5 /REP_DB=WormBase Gene ID /WP=CE18861 /TR=Q9XUT7 /GB=CAB04584.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060532(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060532 NCBI Caenorhabditis elegans K08C9.5 (K08C9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000013585 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11491514:11492693:1 11/11 None
K08C9.5 ENSEMBL cdna:known chromosome:CEL140:I:11491514:11492693:1 gene:K08C9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013574 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11491444-11492624(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08C9.5
Entrez Gene 187139 Entrez gene
SwissProt Q9XUT7 EMBL-EBI
WormBase CE18861 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04584 Hypothetical protein K08C9.5 [Caenorhabditis elegans] ref|NP_492933.1| K08C9.5 [Caenorhabditis elegans] 1.0E-178
Sequence
Target Sequence 
>C. ELEGANS:178183_AT
gtttttgtaatgactgtttccgattttataggaaaatttgatgtgggaactttgagagtt
ttatttgagaatttaaaagttgaaaatctaagactaggttacctaattcccccgtcccat
gtaaatttattgctagaacctcaaaatttgaaaatttccaaaaaattagtcctaaaatcc
accccgagcacccccgaagatttaagttttggcatggaagagctccagattgagcacagc
gattggcttgagctagggcaacttttgagaatccgctgtaagtctgtagatcttggattc
accagcctcactagcaacaattggaatttgtatctgaaattttggaaatcggcagccctg
actgatattcgagagctcaaagcgagaagtgaggatggatggaatgtggaaaaattgctc
catggcttggatgctcgggaagttgctccaaacacttgggaaataataaaaacaacgttg
ccctgtaaaagtaccaccgggaccatatttcttcgaacttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTGTAATGACTGTTTCCGATT 51 449 388 Antisense
TCCCCCGTCCCATGTAAATTTATTG 357 587 495 Antisense
GAGCACAGCGATTGGCTTGAGCTAG 661 389 619 Antisense
GAATCCGCTGTAAGTCTGTAGATCT 686 329 656 Antisense
GTAGATCTTGGATTCACCAGCCTCA 430 455 673 Antisense
TCACCAGCCTCACTAGCAACAATTG 661 625 686 Antisense
AATCGGCAGCCCTGACTGATATTCG 477 169 734 Antisense
ATTGCTCCATGGCTTGGATGCTCGG 328 5 801 Antisense
GGATGCTCGGGAAGTTGCTCCAAAC 691 513 816 Antisense
TGTAAAAGTACCACCGGGACCATAT 213 557 871 Antisense
GGGACCATATTTCTTCGAACTTTTG 274 477 886 Antisense
Sequence Source Affymetrix Proprietary Database