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[178180_at]

Description F21H7.4 /REP_DB=WormBase Gene ID /WP=CE15876 /TR=O45388 /GB=CAB07590.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 61      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 50.7
(-1)
A 		84.2
(3)
A 		52.5
(-0.8)
A 		34.3
(-3)
A 		50
B 69.7
(3)
A 		27
(-3)
A 		36.6
(-1.7)
A 		38.9
(-1.3)
A 		43
C 72.1
(3)
A 		56.8
(0.5)
A 		68.7
(2.5)
A 		34.7
(-3)
A 		37
avr 64.2
(3) 		56
(1.3) 		52.6
(0.5) 		36
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 109.8
(2.6)
P 		98.5
(1.9)
A 		116.8
(3)
P 		50.3
(-1)
M 		63.7
(-0.2)
A 		17.6
(-3)
A 		99
B 71.5
(0.1)
P 		72.4
(0.2)
A 		70.8
(0)
P 		106.2
(3)
P 		64.2
(-0.5)
M 		34.8
(-3)
A 		71
C 92.1
(1.2)
A 		70.3
(-0.4)
A 		117.1
(3)
P 		107
(2.3)
P 		69.8
(-0.4)
P 		33.3
(-3)
A 		84
avr 91.1
(2.1) 		80.4
(1.3) 		101.6
(3) 		87.8
(1.9) 		65.9
(0.1) 		28.6
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 18.5
(3)
A 		18.3
(2.9)
A 		13.7
(0.9)
A 		5
(-3)
A 		14
B 22.2
(3)
A 		6.7
(-3)
A 		8.5
(-2.3)
A 		8.3
(-2.4)
A 		16
C 23.9
(3)
A 		16.3
(0.5)
A 		23.9
(3)
A 		5.8
(-3)
A 		18
avr 21.5
(3) 		13.8
(-0.1) 		15.4
(0.6) 		6.4
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 20.2
(0.1)
P 		35
(3)
A 		25.4
(1.1)
P 		12.8
(-1.3)
M 		19.2
(-0.1)
A 		4.3
(-3)
A 		31
B 24.9
(1.7)
P 		24.1
(1.4)
A 		17.2
(-1.3)
P 		28.1
(3)
P 		26.1
(2.2)
M 		13
(-3)
A 		15
C 34.2
(3)
A 		21.5
(-0.3)
A 		29.8
(1.9)
P 		21.5
(-0.3)
P 		22.6
(-0)
P 		11.2
(-3)
A 		23
avr 26.4
(2.8) 		26.9
(3) 		24.1
(2) 		20.8
(0.9) 		22.6
(1.5) 		9.5
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178180_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13413
Sequence Type Exemplar sequence
Representative Public ID F21H7.4 NCBI
Target Description F21H7.4 /REP_DB=WormBase Gene ID /WP=CE15876 /TR=O45388 /GB=CAB07590.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074696(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074696 NCBI Caenorhabditis elegans F21H7.4 (F21H7.4) mRNA, complete cds. 11/11 None
SNAP00000014723 ENSEMBL cdna:SNAP chromosome:CEL140:V:16236588:16237224:1 9/11 None
GENEFINDER00000014735 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16236588:16237444:1 11/11 None
F21H7.4 ENSEMBL cdna:known chromosome:CEL140:V:16236507:16237446:1 gene:F21H7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16236506-16237444(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21H7.4
Entrez Gene 180089 Entrez gene
SwissProt O45388 EMBL-EBI
WormBase CE15876 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07590 Hypothetical protein F21H7.4 [Caenorhabditis elegans] ref|NP_507097.1| F21H7.4 [Caenorhabditis elegans] 1.0E-112
blast CAB07590 Hypothetical protein F21H7.4 [Caenorhabditis elegans] ref|NP_507097.1| F21H7.4 [Caenorhabditis elegans] 2.0E-95
blast CAE61126 Hypothetical protein CBG04885 [Caenorhabditis briggsae] emb|CAE61097.1| Hypothetical protein CBG04852 [Caenorhabditis briggsae] 1.0E-59
blast CAE61132 Hypothetical protein CBG04893 [Caenorhabditis briggsae] 2.0E-57
blast CAB07590 Hypothetical protein F21H7.4 [Caenorhabditis elegans] ref|NP_507097.1| F21H7.4 [Caenorhabditis elegans] 4.0E-56
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507097.1 1 30-49
F21H7.4 1 30-49
Sequence
Target Sequence 
>C. ELEGANS:178180_AT
ccccaccaagacctgagtgcgatgaaggatggcttcgttttgaaagacctaatggtgttt
ggtgtattaatgttgttcatagtggagtaacaaatgggtatttctctcagccacaggctc
aagctgcttgttctgcgtcgggagctactctaaccggattccaaaatgacaatgagcgta
tgacagttgcctctgaagcattgaagaagctcaccgcagctggcggccaaattgccgggc
tttggctcggagcaactaacaccccgaattgtaaagttgcaagctgtgaaccatatgcaa
cttacacctggaccgatggggacacaactggcaatggaggattcaaatggggacgtgacg
aacctgataacctgaattggccagggcccacgatctgtattcaacaatttattatgcaac
caaactgggtggtggggccaaatgattacgctgtatggaaaaactatttcaccaatggag
atttagacaagtaccagtgtggcgcacaagcatacccatttacaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCACCAAGACCTGAGTGCGATGA 560 261 299 Antisense
AAATGGGTATTTCTCTCAGCCACAG 290 121 390 Antisense
TCAGCCACAGGCTCAAGCTGCTTGT 375 623 405 Antisense
GGAGCTACTCTAACCGGATTCCAAA 179 521 439 Antisense
GAGCGTATGACAGTTGCCTCTGAAG 279 387 472 Antisense
GCAGCTGGCGGCCAAATTGCCGGGC 668 311 514 Antisense
TTTGGCTCGGAGCAACTAACACCCC 83 667 539 Antisense
CATATGCAACTTACACCTGGACCGA 451 213 590 Antisense
GACCGATGGGGACACAACTGGCAAT 664 379 609 Antisense
TGAATTGGCCAGGGCCCACGATCTG 200 575 671 Antisense
CGCACAAGCATACCCATTTACAAGA 205 255 801 Antisense
Sequence Source Affymetrix Proprietary Database