[Home] | [Total List]

[178179_at]

Description T07C4.4 /REP_DB=WormBase Gene ID /WP=CE00637 /TR=Q22291 /GB=CAA82577.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 36      6grp_cgc > 28      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 77.9
(3)
A 		49.6
(0.5)
A 		27.6
(-1.5)
A 		10.9
(-3)
A 		67
B 11
(-3)
A 		44.2
(1.2)
A 		11.8
(-2.9)
A 		58.6
(3)
A 		48
C 21.4
(-2.4)
A 		63.8
(3)
A 		20.4
(-2.6)
A 		17
(-3)
A 		47
avr 36.8
(0.1) 		52.5
(3) 		19.9
(-3) 		28.8
(-1.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 38.6
(0.7)
A 		29.1
(-0.6)
A 		12.4
(-3)
A 		17.8
(-2.2)
A 		19
(-2.1)
A 		54.6
(3)
A 		42
B 23.3
(1.5)
A 		19.4
(0.2)
A 		14.8
(-1.3)
A 		12.5
(-2)
A 		9.5
(-3)
A 		28.1
(3)
A 		19
C 21.6
(-1.2)
A 		16.7
(-1.8)
A 		24.8
(-0.8)
A 		7.3
(-3)
A 		13.6
(-2.2)
A 		54.1
(3)
A 		47
avr 27.8
(-0.2) 		21.7
(-1.3) 		17.3
(-2.1) 		12.5
(-3) 		14
(-2.7) 		45.6
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 28.4
(3)
A 		10.8
(-0.9)
A 		7.2
(-1.7)
A 		1.6
(-3)
A 		27
B 3.5
(-2.5)
A 		10.9
(2)
A 		2.7
(-3)
A 		12.5
(3)
A 		10
C 7.1
(-1.4)
A 		18.3
(3)
A 		7.1
(-1.4)
A 		2.9
(-3)
A 		15
avr 13
(2.8) 		13.3
(3) 		5.7
(-3) 		5.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.1
(-0.5)
A 		10.3
(1.3)
A 		2.7
(-3)
A 		4.5
(-2)
A 		5.7
(-1.3)
A 		13.3
(3)
A 		11
B 8.1
(1)
A 		6.4
(-0.4)
A 		3.6
(-2.8)
A 		3.3
(-3)
A 		3.8
(-2.6)
A 		10.5
(3)
A 		7
C 8
(-0.7)
A 		5.1
(-1.7)
A 		6.3
(-1.3)
A 		1.5
(-3)
A 		4.4
(-2)
A 		18.1
(3)
A 		17
avr 7.7
(-0.5) 		7.3
(-0.7) 		4.2
(-2.4) 		3.1
(-3) 		4.6
(-2.2) 		14
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6149
Sequence Type Exemplar sequence
Representative Public ID T07C4.4 NCBI
Target Description T07C4.4 /REP_DB=WormBase Gene ID /WP=CE00637 /TR=Q22291 /GB=CAA82577.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066889(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066889 NCBI Caenorhabditis elegans SaPosin-like Protein family member (spp-1) (spp-1) mRNA, complete cds. 9/11 A 
SNAP00000030160 ENSEMBL cdna:SNAP chromosome:CEL140:III:10355028:10355555:-1 11/11 None
T07C4.4.1 ENSEMBL cdna:known chromosome:CEL140:III:10355004:10355554:-1 gene:T07C4.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030163 1/11 Cross Hyb Matching Probes None
T07C4.4.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10355023-10355551(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol spp-1
Ensembl T07C4.4
Entrez Gene 176452 Entrez gene
SwissProt Q22291 EMBL-EBI
WormBase CE35363 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82577 Hypothetical protein T07C4.4 [Caenorhabditis elegans] ref|NP_499290.2| SaPosin-like Protein family member (spp-1) [Caenorhabditis elegans] 2.0E-28
blast CAA82577 Hypothetical protein T07C4.4 [Caenorhabditis elegans] ref|NP_499290.2| SaPosin-like Protein family member (spp-1) [Caenorhabditis elegans] 3.0E-28
blast CAE56760 Hypothetical protein CBG24563 [Caenorhabditis briggsae] 2.0E-20
Sequence
Target Sequence 
>C. ELEGANS:178179_AT
ttgatcttttcctccatgctgaaaacatcagaaacgattcgattccttatcagtgccgcc
gcgaagttgataaaagacacgagcatcactgctccggaatgactcgcattcttccgtgtc
ttttccttgtcttgctcgccgctgctccacttctagccaatccagctaacccactcaatc
tcaagaagcatcacggtgttttctgtgatgtctgcaaggctctcgtcgagggtggagaga
aggttggagatgatgatctcgatgcatggcttgatgtgaacatcggaactctttgctgga
ctatgctgttgccgttgcatcacgagtgtgaggaagagctgaagaaggtcaagaaggagc
tgaaaaaggatattgagaacaaggattctccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGATCTTTTCCTCCATGCTGAAAA 237 705 20 Antisense
TTTCCTCCATGCTGAAAACATCAGA 499 669 27 Antisense
AACATCAGAAACGATTCGATTCCTT 30 139 43 Antisense
ACGATTCGATTCCTTATCAGTGCCG 545 93 53 Antisense
ATCAGTGCCGCCGCGAAGTTGATAA 113 27 68 Antisense
GTGCCGCCGCGAAGTTGATAAAAGA 324 477 72 Antisense
GATAAAAGACACGAGCATCACTGCT 529 423 88 Antisense
GACACGAGCATCACTGCTCCGGAAT 577 367 95 Antisense
GAGCATCACTGCTCCGGAATGACTC 597 387 100 Antisense
CACTGCTCCGGAATGACTCGCATTC 173 199 106 Antisense
GATATTGAGAACAAGGATTCTCCAG 165 427 388 Antisense
Sequence Source Affymetrix Proprietary Database