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[178178_s_at]

Description F36D3.1 /REP_DB=WormBase Gene ID /WP=CE25872 /TR=O45458 /GB=CAB04314.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 64      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_total > 55      4grp_total > 58      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 153.9
(-3)
P 		232
(1.6)
P 		256.8
(3)
P 		191.5
(-0.8)
P 		103
B 220.5
(3)
P 		210.4
(1.9)
P 		209.9
(1.9)
P 		163.9
(-3)
P 		57
C 240.3
(3)
P 		212.7
(-0.7)
P 		195.9
(-3)
P 		233.6
(2.1)
P 		44
avr 204.9
(-0.9) 		218.4
(2.4) 		220.9
(3) 		196.3
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 204.7
(0.2)
P 		136.5
(-3)
P 		264
(3)
P 		162.9
(-1.8)
P 		149.1
(-2.4)
P 		148.8
(-2.4)
P 		128
B 184.3
(-0.7)
P 		176
(-1.2)
P 		234.6
(2.3)
P 		148.4
(-2.8)
P 		144.9
(-3)
P 		246.6
(3)
P 		102
C 140
(-3)
A 		203.8
(0.1)
P 		232.4
(1.5)
P 		207.6
(0.3)
P 		141.7
(-2.9)
P 		264.5
(3)
P 		125
avr 176.3
(-1.1) 		172.1
(-1.4) 		243.7
(3) 		173
(-1.3) 		145.2
(-3) 		220
(1.6) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 56
(1.3)
P 		50.4
(0.4)
P 		67.1
(3)
P 		28
(-3)
P 		39
B 70.3
(3)
P 		52
(-0.1)
P 		48.6
(-0.7)
P 		34.9
(-3)
P 		35
C 79.5
(3)
P 		61.2
(0.3)
P 		68.3
(1.3)
P 		39.4
(-3)
P 		40
avr 68.6
(3) 		54.5
(0.5) 		61.3
(1.7) 		34.1
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 37.7
(-2.6)
P 		48.6
(0.5)
P 		57.5
(3)
P 		41.3
(-1.6)
P 		45
(-0.5)
P 		36.2
(-3)
P 		21
B 64.1
(-0.2)
P 		58.6
(-0.8)
P 		57
(-1)
P 		39.3
(-3)
P 		58.9
(-0.8)
P 		92
(3)
P 		53
C 51.9
(-1.7)
A 		62.2
(-0.4)
P 		59.1
(-0.8)
P 		41.7
(-3)
P 		45.9
(-2.5)
P 		88.5
(3)
P 		47
avr 51.2
(-1) 		56.5
(0) 		57.9
(0.3) 		40.8
(-3) 		49.9
(-1.3) 		72.2
(3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178178_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13236
Sequence Type Exemplar sequence
Representative Public ID F36D3.1 NCBI
Target Description F36D3.1 /REP_DB=WormBase Gene ID /WP=CE25872 /TR=O45458 /GB=CAB04314.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074777 NCBI Caenorhabditis elegans F36D3.1 (F36D3.1) mRNA, complete cds. 11/11 A 
SNAP00000025144 ENSEMBL cdna:SNAP chromosome:CEL140:V:16501952:16505276:1 11/11 None
GENEFINDER00000025159 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16501952:16505276:1 11/11 None
F36D3.1.2 ENSEMBL cdna:known chromosome:CEL140:V:16501933:16505276:1 gene:F36D3.1 11/11 None
F36D3.1.1 ENSEMBL cdna:known chromosome:CEL140:V:16501934:16505450:1 gene:F36D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16501951-16504229(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D3.1
Entrez Gene 180105 Entrez gene
SwissProt O45458 EMBL-EBI
WormBase CE25872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04314 Hypothetical protein F36D3.1 [Caenorhabditis elegans] ref|NP_507178.1| F36D3.1 [Caenorhabditis elegans] 0.0
blast CAE62933 Hypothetical protein CBG07140 [Caenorhabditis briggsae] 7.0E-79
Sequence
Target Sequence 
>C. ELEGANS:178178_S_AT
aacggagaggtcttcgtacacaccgtagccacaactccaaatgcttttgctcttccgcag
gaaattggtgaaaaatacgcggatgccgtgtggtccccgtatctcaagtttgtcaaggac
gatgaaaatgatatttttaccagcggctgcagaggcggtttactcggagagtgtattttc
acatatgcaccatctggagacttgctcttcgaagttattgagttcattggcactgtgtca
ttgacagagtgcccctacgcactggctccctggacgctcgaatttattggaaagaacatg
aaaacgatcaactatccaggacctaaacatatttgcgccaaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGAGAGGTCTTCGTACACACCG 134 143 208 Antisense
ACCGTAGCCACAACTCCAAATGCTT 646 87 229 Antisense
TGCTTTTGCTCTTCCGCAGGAAATT 392 577 249 Antisense
AAAATACGCGGATGCCGTGTGGTCC 387 133 279 Antisense
GTCCCCGTATCTCAAGTTTGTCAAG 531 473 300 Antisense
TACCAGCGGCTGCAGAGGCGGTTTA 13 651 345 Antisense
GTATTTTCACATATGCACCATCTGG 460 453 380 Antisense
CACCATCTGGAGACTTGCTCTTCGA 62 203 395 Antisense
TGTGTCATTGACAGAGTGCCCCTAC 370 555 441 Antisense
CTCCCTGGACGCTCGAATTTATTGG 550 231 473 Antisense
GACCTAAACATATTTGCGCCAACCC 437 383 527 Antisense
Sequence Source Affymetrix Proprietary Database