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[178176_at]

Description F20C5.3 /REP_DB=WormBase Gene ID /WP=CE03240 /TR=Q19634 /GB=CAA92296.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 38      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 59.1
(-0.3)
A 		35.5
(-3)
A 		59
(-0.3)
A 		87.2
(3)
A 		52
B 86.9
(2.2)
A 		95.6
(3)
A 		30.9
(-2.6)
A 		26.7
(-3)
A 		69
C 69.6
(3)
A 		40.8
(-3)
A 		44.3
(-2.3)
A 		53.7
(-0.3)
A 		29
avr 71.9
(3) 		57.3
(-0.2) 		44.7
(-3) 		55.9
(-0.5) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 64
(-1.6)
A 		30.8
(-2.9)
A 		28.1
(-3)
A 		34.1
(-2.8)
A 		181.3
(3)
A 		118.8
(0.6)
A 		153
B 28.7
(-3)
A 		28
(-3)
A 		61.3
(-0.9)
A 		80.2
(0.3)
A 		61.2
(-0.9)
A 		122.7
(3)
A 		95
C 27.5
(-3)
A 		66.4
(-0.7)
A 		43.9
(-2)
A 		129.3
(3)
A 		83.6
(0.3)
A 		90.4
(0.7)
A 		102
avr 40.1
(-3) 		41.7
(-2.9) 		44.4
(-2.6) 		81.2
(0.5) 		108.7
(2.8) 		110.6
(3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 21.5
(3)
A 		7.7
(-3)
A 		15.4
(0.3)
A 		12.8
(-0.8)
A 		14
B 27.7
(3)
A 		23.6
(1.9)
A 		7.2
(-2.6)
A 		5.7
(-3)
A 		22
C 23
(3)
A 		11.7
(-1.9)
A 		15.5
(-0.2)
A 		9.1
(-3)
A 		14
avr 24.1
(3) 		14.3
(-0.9) 		12.7
(-1.6) 		9.2
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 11.8
(-2.3)
A 		10.9
(-2.4)
A 		6.1
(-3)
A 		8.6
(-2.7)
A 		54.7
(3)
A 		28.9
(-0.2)
A 		49
B 10
(-2.9)
A 		9.3
(-3)
A 		14.9
(-2.1)
A 		21.2
(-1)
A 		24.9
(-0.4)
A 		45.8
(3)
A 		37
C 10.2
(-3)
A 		20.3
(0)
A 		11.2
(-2.7)
A 		26
(1.7)
A 		27.1
(2)
A 		30.3
(3)
A 		20
avr 10.7
(-3) 		13.5
(-2.3) 		10.7
(-3) 		18.6
(-1.1) 		35.6
(3) 		35
(2.9) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8954
Sequence Type Exemplar sequence
Representative Public ID F20C5.3 NCBI
Target Description F20C5.3 /REP_DB=WormBase Gene ID /WP=CE03240 /TR=Q19634 /GB=CAA92296.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069108
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000022215 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8753369:8754794:-1 10/11 None
GENEFINDER00000022227 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8753369:8754794:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069108 8/11 Cross Hyb Matching Probes None
F20C5.3 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8753374-8754800(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92296 Hypothetical protein F20C5.3 [Caenorhabditis elegans] ref|NP_501509.2| F20C5.3 [Caenorhabditis elegans] 1.0E-124
blast CAA92296 Hypothetical protein F20C5.3 [Caenorhabditis elegans] ref|NP_501509.2| F20C5.3 [Caenorhabditis elegans] 1.0E-122
Sequence
Target Sequence 
>C. ELEGANS:178176_AT
tactcggagcctgctcgacagacgacgtggaaggagaaactcagtcaactcaatcatgag
aacatgagctataatgctcacaataagagaagtagtcgccagcgaggaaatagttatcgg
ttgcctcagcaaaacattcctccaccatcgcatcatcaatcgtctcaagtcatgcgagga
tttcaaaacgcaccgttccaaatgcaaccgcattacaacaatgaaaggaagcctcaaagt
cgtaggaatgacactatgcgagcatctaaatcagcgtatgctgccgccactgctcccgta
aagaagcacgtgagaccggcaaatgaacagcacatgaggaagctgaacgacttgctccgt
ccattctcctacggttcagatgatctctatgaggaaacacagccgtttgtgaaagaaact
tcacttgcaaacgtggatattcagatctgccaaaccaggccaaaagtgccgcccggtaag
atgtggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCGGAGCCTGCTCGACAGACGA 686 645 220 Antisense
GGAAATAGTTATCGGTTGCCTCAGC 242 527 325 Antisense
GGTTGCCTCAGCAAAACATTCCTCC 12 509 338 Antisense
ATCGCATCATCAATCGTCTCAAGTC 26 37 366 Antisense
AAACGCACCGTTCCAAATGCAACCG 354 125 405 Antisense
TAAATCAGCGTATGCTGCCGCCACT 428 639 486 Antisense
GCCACTGCTCCCGTAAAGAAGCACG 289 279 505 Antisense
TCCATTCTCCTACGGTTCAGATGAT 376 591 579 Antisense
GTGGATATTCAGATCTGCCAAACCA 100 491 652 Antisense
GCCAAACCAGGCCAAAAGTGCCGCC 129 277 668 Antisense
AGTGCCGCCCGGTAAGATGTGGATA 69 61 684 Antisense
Sequence Source Affymetrix Proprietary Database