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[178175_at]

Description T26H2.4 /REP_DB=WormBase Gene ID /WP=CE16490 /TR=O18137 /GB=CAB04846.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 17.1
(-1.4)
A 		5.1
(-3)
A 		19
(-1.1)
A 		49.5
(3)
A 		44
B 44.4
(3)
A 		28.9
(-1.5)
A 		23.7
(-3)
A 		30.7
(-1)
A 		21
C 1.6
(-3)
A 		31.3
(1.6)
A 		12.7
(-1.3)
A 		40.1
(3)
A 		39
avr 21
(-2.3) 		21.8
(-2.1) 		18.5
(-3) 		40.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 10.5
(-1.6)
A 		23.6
(0.4)
A 		1.1
(-3)
A 		40.5
(3)
A 		2.3
(-2.8)
A 		40.2
(3)
A 		39
B 5.4
(-3)
A 		21.1
(-0.3)
A 		26.1
(0.6)
A 		5.2
(-3)
A 		32.1
(1.6)
A 		40
(3)
P 		35
C 0.9
(-3)
A 		42.3
(0.4)
P 		35.5
(-0.1)
A 		73.1
(3)
A 		19.8
(-1.4)
A 		39.2
(0.2)
A 		72
avr 5.6
(-3) 		29
(1.1) 		20.9
(-0.3) 		39.6
(3) 		18.1
(-0.8) 		39.8
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.2
(2)
A 		1.1
(-3)
A 		5
(0.8)
A 		7.2
(3)
A 		6
B 14.2
(3)
A 		7.1
(-1.9)
A 		5.5
(-3)
A 		6.6
(-2.2)
A 		9
C 0.5
(-3)
A 		9
(3)
A 		4.4
(-0.2)
A 		6.8
(1.4)
A 		9
avr 7
(3) 		5.7
(-0.9) 		5
(-3) 		6.9
(2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.9
(-2)
A 		8.4
(1.9)
A 		0.2
(-3)
A 		10.3
(3)
A 		0.7
(-2.7)
A 		9.8
(2.7)
A 		10
B 1.9
(-2.8)
A 		7
(-0.5)
A 		6.3
(-0.8)
A 		1.4
(-3)
A 		13.1
(2.2)
A 		14.9
(3)
P 		14
C 0.3
(-3)
A 		12.9
(2.3)
P 		9
(0.6)
A 		14.7
(3)
A 		6.4
(-0.5)
A 		13.1
(2.3)
A 		14
avr 1.4
(-3) 		9.4
(1.3) 		5.2
(-1) 		8.8
(1) 		6.7
(-0.2) 		12.6
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13209
Sequence Type Exemplar sequence
Representative Public ID T26H2.4 NCBI
Target Description T26H2.4 /REP_DB=WormBase Gene ID /WP=CE16490 /TR=O18137 /GB=CAB04846.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075338 NCBI Caenorhabditis elegans T26H2.4 (T26H2.4) mRNA, complete cds. 11/11 None
SNAP00000014893 ENSEMBL cdna:SNAP chromosome:CEL140:V:19236530:19238158:1 11/11 None
GENEFINDER00000014905 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19236530:19238158:1 11/11 None
T26H2.4 ENSEMBL cdna:known chromosome:CEL140:V:19236530:19238158:1 gene:T26H2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19236529-19238158(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26H2.4
Entrez Gene 188949 Entrez gene
SwissProt O18137 EMBL-EBI
WormBase CE16490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04846 Hypothetical protein T26H2.4 [Caenorhabditis elegans] ref|NP_507739.1| T26H2.4 [Caenorhabditis elegans] 0.0
blast CAB04844 Hypothetical protein T26H2.2 [Caenorhabditis elegans] ref|NP_507741.1| T26H2.2 [Caenorhabditis elegans] 4.0E-57
blast CAB04466 Hypothetical protein F55C9.1 [Caenorhabditis elegans] ref|NP_507750.1| F55C9.1 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.1E-6
Sequence
Target Sequence 
>C. ELEGANS:178175_AT
gacgctggcgatgatgttcctttaatagttcttcaagatttgttcaaaaacatttgtata
acacgactaatatgtatctcggaaatatcgcctaataacatgcaaaagtacgcttctgtc
catgcaagagactgtatgattccaatgtctacagatctggaaatacattcatcagcttat
ccaaccttttgttcaagctttgacagcctagatattcggactccgctacactcgcccaat
gatttgttaaactttaacagttcgactgtaacaatcactgatagcagattaacagaaaaa
gactgcaatttgttcttgaagcattggctacttgggatatcaagtcaaaatctgaaacta
ctgactgtgtgttttctgattgatgacaagaatgctctattggatggcattttctacacc
cagcaaccggagcctagagccatgggatttgaaagccgacggtttgattacaggacaatc
cgtggtagctttgatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCTGGCGATGATGTTCCTTTAA 68 381 436 Antisense
GTACGCTTCTGTCCATGCAAGAGAC 635 457 543 Antisense
ACATTCATCAGCTTATCCAACCTTT 386 105 600 Antisense
TCCAACCTTTTGTTCAAGCTTTGAC 78 587 615 Antisense
ACAGCCTAGATATTCGGACTCCGCT 610 109 638 Antisense
GCTACACTCGCCCAATGATTTGTTA 78 303 660 Antisense
ACTACTGACTGTGTGTTTTCTGATT 608 101 792 Antisense
TTGGATGGCATTTTCTACACCCAGC 491 705 835 Antisense
CAACCGGAGCCTAGAGCCATGGGAT 252 187 859 Antisense
GAAAGCCGACGGTTTGATTACAGGA 400 359 886 Antisense
GGACAATCCGTGGTAGCTTTGATGT 226 527 908 Antisense
Sequence Source Affymetrix Proprietary Database