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[178174_s_at]

Description Y41E3.7 /REP_DB=WormBase Gene ID /WP=CE24268 /TR=O62444 /GB=CAB09005.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 84      6grp_total > 49      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 526
1 2 3 4 range
A 687.1
(1.8)
P 		442.9
(-2.8)
P 		433.3
(-3)
P 		752.5
(3)
P 		319
B 749.8
(1.3)
P 		369.7
(-3)
P 		410.6
(-2.5)
P 		895.3
(3)
P 		526
C 691.9
(3)
P 		476.5
(-3)
P 		476.8
(-3)
P 		689.9
(2.9)
P 		215
avr 709.6
(1.8) 		429.7
(-3) 		440.2
(-2.8) 		779.2
(3) 		350

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 496
1 2 3 4 5 6 range
A 377.4
(-2.2)
P 		470.4
(-0.5)
P 		450.3
(-0.8)
P 		333.3
(-3)
P 		615.3
(2.2)
P 		657.3
(3)
P 		324
B 692.6
(1.2)
P 		481.2
(-2.5)
P 		465.6
(-2.8)
P 		452.6
(-3)
P 		682
(1)
P 		797.3
(3)
P 		345
C 829.5
(3)
P 		425.4
(-2.6)
P 		399.1
(-3)
P 		429.1
(-2.6)
P 		578.9
(-0.5)
P 		714.8
(1.4)
P 		430
avr 633.2
(1.3) 		459
(-2) 		438.3
(-2.4) 		405
(-3) 		625.4
(1.2) 		723.1
(3) 		318
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 250.2
(3)
P 		96.1
(-3)
P 		113.3
(-2.3)
P 		110.2
(-2.5)
P 		154
B 239.1
(3)
P 		91.3
(-3)
P 		95.2
(-2.8)
P 		190.8
(1)
P 		148
C 229
(3)
P 		137
(-1.9)
P 		166.2
(-0.3)
P 		116.3
(-3)
P 		113
avr 239.4
(3) 		108.1
(-3) 		124.9
(-2.2) 		139.1
(-1.6) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 69.6
(-3)
P 		167.3
(2)
P 		98.1
(-1.5)
P 		84.5
(-2.2)
P 		185.7
(3)
P 		160
(1.7)
P 		116
B 241
(1.2)
P 		160.2
(-1.5)
P 		113.1
(-3)
P 		119.9
(-2.8)
P 		277.1
(2.3)
P 		297.3
(3)
P 		184
C 307.5
(3)
P 		129.8
(-1.8)
P 		101.6
(-2.6)
P 		86.3
(-3)
P 		187.3
(-0.3)
P 		239.3
(1.2)
P 		221
avr 206
(1.8) 		152.4
(-0.5) 		104.3
(-2.7) 		96.9
(-3) 		216.7
(2.3) 		232.2
(3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178174_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9819
Sequence Type Exemplar sequence
Representative Public ID Y41E3.7 NCBI
Target Description Y41E3.7 /REP_DB=WormBase Gene ID /WP=CE24268 /TR=O62444 /GB=CAB09005.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070412 NCBI Caenorhabditis elegans Y41E3.7 (Y41E3.7) mRNA, complete cds. 11/11 None
SNAP00000001441 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15019911:15025143:1 11/11 None
GENEFINDER00000001470 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15014006:15025143:1 11/11 None
Y41E3.7 ENSEMBL cdna:known chromosome:CEL140:IV:15014004:15025461:1 gene:Y41E3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15014011-15025149(+) 98.85 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41E3.7
Entrez Gene 178416 Entrez gene
SwissProt O62444 EMBL-EBI
WormBase CE24268 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.24714.1.S1_AT similar to acyl-Coenzyme A binding domain containing 3 cfa
DROSOPHILA_2:1640794_AT dm
DROSGENOME1:154705_AT dm
CHICKEN:GGAAFFX.12723.1.S1_S_AT acyl-Coenzyme A binding domain containing 3 gga
CHICKEN:GGAAFFX.5829.2.S1_S_AT acyl-Coenzyme A binding domain containing 3 gga
HG-U133A:202324_S_AT acyl-Coenzyme A binding domain containing 3 hs
HG-U133_PLUS_2:202324_S_AT acyl-Coenzyme A binding domain containing 3 hs
HG-U133A_2:202324_S_AT acyl-Coenzyme A binding domain containing 3 hs
HG-FOCUS:202324_S_AT acyl-Coenzyme A binding domain containing 3 hs
HU35KSUBA:HUM_ALU_AT acyl-Coenzyme A binding domain containing 3 hs
HU35KSUBB:HUM_ALU_AT acyl-Coenzyme A binding domain containing 3 hs
HU35KSUBC:HUM_ALU_AT acyl-Coenzyme A binding domain containing 3 hs
HU35KSUBD:HUM_ALU_AT acyl-Coenzyme A binding domain containing 3 hs
HUGENEFL:HUM_ALU_AT acyl-Coenzyme A binding domain containing 3 hs
HC-G110:HUM_ALU_AT acyl-Coenzyme A binding domain containing 3 hs
HU35KSUBB:RC_T86722_AT acyl-Coenzyme A binding domain containing 3 hs
HU35KSUBB:RC_N22895_AT acyl-Coenzyme A binding domain containing 3 hs
HU35KSUBC:RC_N90029_AT acyl-Coenzyme A binding domain containing 3 hs
U133_X3P:G12232390_3P_A_AT acyl-Coenzyme A binding domain containing 3 hs
U133_X3P:HS.6831.0.S1_3P_A_AT acyl-Coenzyme A binding domain containing 3 hs
HG-U133A_2:202323_S_AT acyl-Coenzyme A binding domain containing 3 hs
HG-U133_PLUS_2:202323_S_AT acyl-Coenzyme A binding domain containing 3 hs
HG-U133A:202323_S_AT acyl-Coenzyme A binding domain containing 3 hs
HG-U95AV2:36827_AT acyl-Coenzyme A binding domain containing 3 hs
HG-U95E:89155_AT acyl-Coenzyme A binding domain containing 3 hs
HG-U95B:51472_AT Acyl-Coenzyme A binding domain containing 3 hs
HG-U95E:78709_AT Acyl-Coenzyme A binding domain containing 3 hs
HU35KSUBC:RC_AA258364_AT Acyl-Coenzyme A binding domain containing 3 hs
MG-U74BV2:112786_I_AT acyl-Coenzyme A binding domain containing 3 mm
MG-U74BV2:108094_AT acyl-Coenzyme A binding domain containing 3 mm
MG-U74BV2:112787_F_AT acyl-Coenzyme A binding domain containing 3 mm
MG-U74BV2:164566_F_AT acyl-Coenzyme A binding domain containing 3 mm
MG-U74CV2:169234_R_AT acyl-Coenzyme A binding domain containing 3 mm
MOE430A:1456316_A_AT acyl-Coenzyme A binding domain containing 3 mm
MOUSE430A_2:1456316_A_AT acyl-Coenzyme A binding domain containing 3 mm
MOUSE430_2:1456316_A_AT acyl-Coenzyme A binding domain containing 3 mm
MOE430A:1452137_AT acyl-Coenzyme A binding domain containing 3 mm
MOUSE430A_2:1452137_AT acyl-Coenzyme A binding domain containing 3 mm
MOUSE430_2:1452137_AT acyl-Coenzyme A binding domain containing 3 mm
MOE430A:1426635_AT acyl-Coenzyme A binding domain containing 3 mm
MOUSE430A_2:1426635_AT acyl-Coenzyme A binding domain containing 3 mm
MOUSE430_2:1426635_AT acyl-Coenzyme A binding domain containing 3 mm
MOE430B:1428668_AT acyl-Coenzyme A binding domain containing 3 mm
MOUSE430_2:1428668_AT acyl-Coenzyme A binding domain containing 3 mm
MU19KSUBB:TC31654_AT Peripherial benzodiazepine receptor associated protein (Pap7) mm
MU19KSUBC:TC38070_AT Peripherial benzodiazepine receptor associated protein (Pap7) mm
RG-U34C:RC_AI234525_AT DMT1-associated protein rn
RAE230A:1373347_AT DMT1-associated protein rn
RAT230_2:1373347_AT DMT1-associated protein rn
RAE230A:1372552_AT DMT1-associated protein rn
RAT230_2:1372552_AT DMT1-associated protein rn
RAE230B:1394734_AT DMT1-associated protein rn
RAT230_2:1394734_AT DMT1-associated protein rn
Protein Similarities
Method ID Description E-Value
blast CAB09005 Hypothetical protein Y41E3.7 [Caenorhabditis elegans] ref|NP_502813.1| Y41E3.7 [Caenorhabditis elegans] 0.0
blast CAE68127 Hypothetical protein CBG13772 [Caenorhabditis briggsae] 0.0
blast CAB09005 Hypothetical protein Y41E3.7 [Caenorhabditis elegans] ref|NP_502813.1| Y41E3.7 [Caenorhabditis elegans] 1.0E-171
blast CAE68127 Hypothetical protein CBG13772 [Caenorhabditis briggsae] 1.0E-156
blast XP_394773 PREDICTED: similar to ENSANGP00000014744 [Apis mellifera] 6.0E-97
Sequence
Target Sequence 
>C. ELEGANS:178174_S_AT
gcctcactctggaatcggcaggatattaatgagttcaaggcgaatatcaagaaagacgga
cacgagggaattattaaagttggacacggcgagacggtgacggtccgggtcccaactcac
gaaaatggttcatgtctattctgggaattcgcgacggatcactacgatattggtttcggt
gtctactttgaatggaccgtagccgacagtaatcaagtttcggtgcacgttagtgaatcc
gatgatgaggaggattatgatgaagcacttgaagcggagcaggcggaagctggaggtggt
ggtggaggagccgctggacagggtggaccaggagatgtggaagctggagccatgcagaca
agacgtgttgatccgaacaagccgcggcaggatgaaataattccggtgtatcgtcgagat
tgtcacgaagaagtgtatgcgggaagtcatcgttatccgggtcgcggaatttatctgctc
aaattcgacaattcgtattctttgtggcgttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTCACTCTGGAATCGGCAGGATA 409 281 772 Antisense
TGGACACGGCGAGACGGTGACGGTC 15 549 852 Antisense
TGGGAATTCGCGACGGATCACTACG 608 553 913 Antisense
GATATTGGTTTCGGTGTCTACTTTG 167 427 937 Antisense
GAATGGACCGTAGCCGACAGTAATC 424 329 961 Antisense
GTAATCAAGTTTCGGTGCACGTTAG 180 463 980 Antisense
GAAGCACTTGAAGCGGAGCAGGCGG 4 341 1033 Antisense
ATAATTCCGGTGTATCGTCGAGATT 543 23 1168 Antisense
GCGGGAAGTCATCGTTATCCGGGTC 452 291 1210 Antisense
CGGGTCGCGGAATTTATCTGCTCAA 647 241 1229 Antisense
CAATTCGTATTCTTTGTGGCGTTCG 636 179 1260 Antisense
Sequence Source Affymetrix Proprietary Database