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[178173_at]

Description T26H2.6 /REP_DB=WormBase Gene ID /WP=CE20105 /TR=Q9XUN2 /GB=CAB04851.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 05      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 28.1
(-0.3)
A 		22.3
(-1)
A 		6.4
(-3)
A 		54.8
(3)
A 		48
B 17.6
(0.2)
A 		7.8
(-2.1)
A 		29.6
(3)
A 		3.8
(-3)
A 		26
C 29.1
(-1.2)
A 		3.7
(-3)
A 		4
(-3)
A 		86.9
(3)
P 		83
avr 24.9
(-0.8) 		11.3
(-3) 		13.3
(-2.7) 		48.5
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 38.3
(3)
A 		7.5
(-3)
A 		26.4
(0.7)
A 		9.8
(-2.6)
A 		11.4
(-2.2)
A 		9.6
(-2.6)
A 		31
B 59.2
(3)
A 		31.9
(0.1)
A 		13.4
(-1.8)
A 		6.1
(-2.6)
A 		2.1
(-3)
A 		10.1
(-2.2)
A 		57
C 25.1
(2.7)
A 		26.3
(3)
A 		6.8
(-1.9)
A 		15.4
(0.3)
A 		2.4
(-3)
A 		2.8
(-2.9)
A 		24
avr 40.9
(3) 		21.9
(-0.2) 		15.5
(-1.3) 		10.4
(-2.1) 		5.3
(-3) 		7.5
(-2.6) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.2
(3)
A 		4.8
(-0.8)
A 		1.7
(-3)
A 		8
(1.4)
A 		9
B 5.6
(1.7)
A 		1.9
(-1.9)
A 		6.9
(3)
A 		0.8
(-3)
A 		6
C 9.6
(0.8)
A 		1.1
(-3)
A 		1.4
(-2.9)
A 		14.6
(3)
P 		14
avr 8.5
(3) 		2.6
(-3) 		3.3
(-2.3) 		7.8
(2.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.1
(3)
A 		2.7
(-2.5)
A 		5.7
(1.3)
A 		2.5
(-2.8)
A 		3.4
(-1.6)
A 		2.3
(-3)
A 		5
B 20.6
(3)
A 		10.6
(-0)
A 		3.2
(-2.3)
A 		1.6
(-2.8)
A 		0.8
(-3)
A 		3.8
(-2.1)
A 		20
C 9.3
(3)
A 		8
(2.1)
A 		1.7
(-2.4)
A 		3.1
(-1.4)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		9
avr 12.3
(3) 		7.1
(0.1) 		3.5
(-2) 		2.4
(-2.6) 		1.7
(-3) 		2.3
(-2.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12992
Sequence Type Exemplar sequence
Representative Public ID T26H2.6 NCBI
Target Description T26H2.6 /REP_DB=WormBase Gene ID /WP=CE20105 /TR=Q9XUN2 /GB=CAB04851.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075336(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075336 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-81) (str-81) mRNA, complete cds. 11/11 None
SNAP00000014888 ENSEMBL cdna:SNAP chromosome:CEL140:V:19228116:19228924:-1 11/11 None
GENEFINDER00000014902 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19228116:19229447:-1 11/11 None
T26H2.6 ENSEMBL cdna:known chromosome:CEL140:V:19228116:19229447:-1 gene:T26H2.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000483 4/11 Cross Hyb Matching Probes None
GENEFINDER00000000501 4/11 Cross Hyb Matching Probes None
F17E9.14 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8336794-8338160(-) 96.63 97.36
chrV:19228115-19229447(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-81
Ensembl T26H2.6
Entrez Gene 188951 Entrez gene
SwissProt Q9XUN2 EMBL-EBI
WormBase CE20105 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04851 Hypothetical protein T26H2.6 [Caenorhabditis elegans] ref|NP_507737.1| Seven TM Receptor family member (str-81) [Caenorhabditis elegans] 0.0
blast CAB04851 Hypothetical protein T26H2.6 [Caenorhabditis elegans] ref|NP_507737.1| Seven TM Receptor family member (str-81) [Caenorhabditis elegans] 1.0E-110
blast CAE58461 Hypothetical protein CBG01601 [Caenorhabditis briggsae] 2.0E-87
blast AAF02104 Seven tm receptor protein 79 [Caenorhabditis elegans] ref|NP_508363.1| Seven TM Receptor family member (str-79) [Caenorhabditis elegans] 2.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.6E-11
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.6E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.6E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507737.1 7 15-37,58-80,95-117,137-159,207-229,256-278,288-310
T26H2.6 7 15-37,58-80,95-117,137-159,207-229,256-278,288-310
SNAP00000014888 4 2-20,64-86,113-135,145-167
GENEFINDER00000014902 7 15-37,58-80,95-117,137-159,207-229,256-278,288-310
Sequence
Target Sequence 
>C. ELEGANS:178173_AT
ttatccattggcactgctcttacactcaacagtgtatttggtgcaatggttattgtgatt
atttattgtggagttaaaacctacaaagtgacacataaaactacatcccacttgtcttcg
catatgtatattcaaaaacaattattcacagcgcttcttgttcagacccttacaccaact
gccttaatttttgttccgtgtgcaatattttatgttctcccacttttcgaacttccactt
gacgccgacgctaatattctcagtatatcattggttttgtatcctatgattgacccaatt
ggagttttgttcatcatcaagccgtacaggaatttcttgaaaaaactcttttgccatcgt
ctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCCATTGGCACTGCTCTTACAC 55 681 625 Antisense
GACACATAAAACTACATCCCACTTG 158 367 714 Antisense
TCCCACTTGTCTTCGCATATGTATA 278 599 730 Antisense
TTATTCACAGCGCTTCTTGTTCAGA 445 679 766 Antisense
ACTGCCTTAATTTTTGTTCCGTGTG 355 89 802 Antisense
TTATGTTCTCCCACTTTTCGAACTT 524 679 834 Antisense
TCCACTTGACGCCGACGCTAATATT 11 589 858 Antisense
ACGCCGACGCTAATATTCTCAGTAT 405 91 866 Antisense
GTTTTGTATCCTATGATTGACCCAA 86 449 898 Antisense
GTTCATCATCAAGCCGTACAGGAAT 443 443 933 Antisense
GAAAAAACTCTTTTGCCATCGTCTC 640 353 963 Antisense
Sequence Source Affymetrix Proprietary Database