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[178172_at]

Description F28B1.3 /REP_DB=WormBase Gene ID /WP=CE15915 /TR=O45413 /GB=CAB04210.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 4.4
(-3)
A 		17.1
(3)
A 		4.4
(-3)
A 		11.3
(0.3)
A 		13
B 3.6
(-3)
A 		3.5
(-3)
A 		9.2
(-1.6)
A 		27.6
(3)
A 		24
C 5.4
(-2.6)
A 		4
(-2.8)
A 		2.5
(-3)
A 		50.2
(3)
A 		48
avr 4.5
(-3) 		8.2
(-2.1) 		5.4
(-2.8) 		29.7
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 13.1
(-0.5)
A 		5.3
(-2.3)
A 		28.1
(3)
A 		8.2
(-1.6)
A 		12.3
(-0.7)
A 		2.2
(-3)
A 		26
B 1.9
(-3)
A 		3.2
(-1.9)
A 		5.5
(0.1)
A 		8.8
(3)
A 		6.5
(1)
A 		3.4
(-1.7)
A 		7
C 5.7
(1.1)
A 		1.9
(-2.4)
A 		7.8
(3)
A 		7.1
(2.4)
A 		6.1
(1.5)
A 		1.2
(-3)
A 		7
avr 6.9
(-0.6) 		3.5
(-2.4) 		13.8
(3) 		8
(-0) 		8.3
(0.1) 		2.3
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.6
(-1.8)
A 		3.7
(3)
A 		1.1
(-3)
A 		1.6
(-1.8)
A 		3
B 1.1
(-2.8)
A 		0.9
(-3)
A 		2.1
(-1.6)
A 		5.9
(3)
A 		5
C 1.8
(-2.3)
A 		1.1
(-2.8)
A 		0.9
(-3)
A 		8.5
(3)
A 		8
avr 1.5
(-2.8) 		1.9
(-2.2) 		1.4
(-3) 		5.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.4
(-1)
A 		1.9
(-1.5)
A 		6.1
(3)
A 		2.1
(-1.3)
A 		3.7
(0.4)
A 		0.5
(-3)
A 		6
B 0.6
(-3)
A 		1.1
(-1.5)
A 		1.3
(-0.9)
A 		2.3
(2.1)
A 		2.6
(3)
A 		1.3
(-0.9)
A 		2
C 2.1
(3)
A 		0.6
(-2.3)
A 		2
(2.6)
A 		1.4
(0.5)
A 		2
(2.6)
A 		0.4
(-3)
A 		2
avr 1.7
(-0.5) 		1.2
(-1.8) 		3.1
(3) 		1.9
(-0) 		2.8
(2.3) 		0.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14090
Sequence Type Exemplar sequence
Representative Public ID F28B1.3 NCBI
Target Description F28B1.3 /REP_DB=WormBase Gene ID /WP=CE15915 /TR=O45413 /GB=CAB04210.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074917(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074917 NCBI Caenorhabditis elegans F28B1.3 (F28B1.3) mRNA, complete cds. 11/11 None
SNAP00000006327 ENSEMBL cdna:SNAP chromosome:CEL140:V:17054588:17058049:1 10/11 None
GENEFINDER00000006335 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17054588:17062497:1 10/11 None
F28B1.3 ENSEMBL cdna:known chromosome:CEL140:V:17054582:17057927:1 gene:F28B1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17054581-17057927(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28B1.3
Entrez Gene 185040 Entrez gene
SwissProt O45413 EMBL-EBI
WormBase CE15915 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04210 Hypothetical protein F28B1.3 [Caenorhabditis elegans] ref|NP_507318.1| F28B1.3 [Caenorhabditis elegans] 0.0
blast CAB04212 Hypothetical protein F28B1.5 [Caenorhabditis elegans] ref|NP_507320.1| F28B1.5 [Caenorhabditis elegans] 0.0
blast CAB04211 Hypothetical protein F28B1.4 [Caenorhabditis elegans] ref|NP_507319.1| F28B1.4 [Caenorhabditis elegans] 1.0E-172
blast CAB04211 Hypothetical protein F28B1.4 [Caenorhabditis elegans] ref|NP_507319.1| F28B1.4 [Caenorhabditis elegans] 1.0E-120
blast CAB04211 Hypothetical protein F28B1.4 [Caenorhabditis elegans] ref|NP_507319.1| F28B1.4 [Caenorhabditis elegans] 1.0E-119
blast CAB04212 Hypothetical protein F28B1.5 [Caenorhabditis elegans] ref|NP_507320.1| F28B1.5 [Caenorhabditis elegans] 6.0E-73
Sequence
Target Sequence 
>C. ELEGANS:178172_AT
gaatggatgcaaatgtccgcagctaaaatacatcgatcaggatggtatcagtagtttggg
cgaacagtcggcctacttgtccaatagacgaattttcaagccgaaagtaaccgtgagcgg
gaattgtgaagtgatagtggatgaagcgggtcttgaccttccagatcattacttaatgat
attccgtgaagaagctcatccaattttcatgcgtcgattcttaaatggaacccagacgtc
tccaatcccactgactgacttggtttgcaggcaacaagacgatcaatatgtgtggttcta
cgaggagaataaactttcggaaaactcgctctacatcgctctccagagcaatgaaggggc
atgtgaatgtccgaaatttaccaatatcagagatgtagtcgcagaagagctactgggaac
ttgtgatatactccagttcttggtgaacaattcagagttgactacggtcttctcaattca
gtatgatttcgaggatatgtgggtgatagatgacgtatatgtaagaaaatcatttttcaa
cttccaaatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGGATGCAAATGTCCGCAGCTA 170 333 1833 Antisense
GTTTGGGCGAACAGTCGGCCTACTT 53 445 1886 Antisense
GTCGGCCTACTTGTCCAATAGACGA 240 471 1899 Antisense
TGAAGCGGGTCTTGACCTTCCAGAT 82 563 1974 Antisense
GTCTTGACCTTCCAGATCATTACTT 191 469 1982 Antisense
GAAGCTCATCCAATTTTCATGCGTC 129 343 2023 Antisense
AAATGGAACCCAGACGTCTCCAATC 326 121 2055 Antisense
GAATGTCCGAAATTTACCAATATCA 429 325 2197 Antisense
GTGATATACTCCAGTTCTTGGTGAA 329 485 2255 Antisense
GACTACGGTCTTCTCAATTCAGTAT 199 373 2292 Antisense
AATCATTTTTCAACTTCCAAATCAT 696 169 2360 Antisense
Sequence Source Affymetrix Proprietary Database