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[178170_at]

Description R11D1.7 /REP_DB=WormBase Gene ID /WP=CE06312 /TR=Q21933 /GB=CAA99901.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 66.2
(1.5)
P 		31.7
(-3)
A 		65.3
(1.4)
A 		77.9
(3)
A 		46
B 67.6
(0.8)
A 		98.3
(3)
A 		30.6
(-1.8)
A 		14.1
(-3)
A 		84
C 93.5
(3)
P 		60.5
(0.4)
A 		16.4
(-3)
A 		93.4
(3)
A 		77
avr 75.8
(3) 		63.5
(1.1) 		37.4
(-3) 		61.8
(0.8) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 36.2
(-0)
A 		25.3
(-1.4)
A 		55.1
(2.2)
A 		43.1
(0.8)
A 		61.5
(3)
A 		11.6
(-3)
A 		50
B 57.7
(3)
M 		31.3
(-0.6)
A 		14.2
(-3)
A 		19
(-2.3)
A 		57.6
(3)
M 		25.9
(-1.4)
A 		44
C 60.7
(3)
A 		45.6
(1.3)
A 		57.2
(2.6)
A 		59.2
(2.8)
A 		8.1
(-3)
A 		15.3
(-2.2)
A 		53
avr 51.5
(3) 		34.1
(-0.1) 		42.2
(1.4) 		40.4
(1) 		42.4
(1.4) 		17.6
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 24.1
(3)
P 		6.9
(-3)
A 		17.1
(0.6)
A 		11.4
(-1.4)
A 		17
B 21.6
(2.2)
A 		24.3
(3)
A 		7.1
(-1.8)
A 		3
(-3)
A 		21
C 31
(3)
P 		17.4
(-0.2)
A 		5.7
(-3)
A 		15.8
(-0.6)
A 		25
avr 25.6
(3) 		16.2
(-0.6) 		10
(-3) 		10.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6.7
(-1.5)
A 		9
(-0.6)
A 		12
(0.5)
A 		10.9
(0.1)
A 		18.6
(3)
A 		2.8
(-3)
A 		16
B 20.1
(2)
M 		10.4
(-0.9)
A 		3.5
(-3)
A 		5
(-2.5)
A 		23.4
(3)
M 		9.7
(-1.1)
A 		20
C 22.5
(3)
A 		13.9
(0.4)
A 		14.6
(0.6)
A 		11.9
(-0.2)
A 		2.6
(-3)
A 		5.1
(-2.2)
A 		20
avr 16.4
(3) 		11.1
(-0) 		10
(-0.7) 		9.3
(-1.1) 		14.9
(2.1) 		5.9
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13652
Sequence Type Exemplar sequence
Representative Public ID R11D1.7 NCBI
Target Description R11D1.7 /REP_DB=WormBase Gene ID /WP=CE06312 /TR=Q21933 /GB=CAA99901.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073777 NCBI Caenorhabditis elegans R11D1.7 (R11D1.7) mRNA, complete cds. 11/11 None
SNAP00000040854 ENSEMBL cdna:SNAP chromosome:CEL140:V:12723707:12725317:1 11/11 None
GENEFINDER00000040867 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12722648:12725317:1 11/11 None
R11D1.7 ENSEMBL cdna:known chromosome:CEL140:V:12722648:12725088:1 gene:R11D1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12722647-12725088(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11D1.7
Entrez Gene 187808 Entrez gene
SwissProt Q21933 EMBL-EBI
WormBase CE06312 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99901 Hypothetical protein R11D1.7 [Caenorhabditis elegans] ref|NP_506178.1| R11D1.7 [Caenorhabditis elegans] 0.0
blast CAA99901 Hypothetical protein R11D1.7 [Caenorhabditis elegans] ref|NP_506178.1| R11D1.7 [Caenorhabditis elegans] 1.0E-162
blast CAE63975 Hypothetical protein CBG08566 [Caenorhabditis briggsae] 1.0E-124
blast CAE63975 Hypothetical protein CBG08566 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506178.1 7 10-27,39-58,73-95,100-122,137-159,179-201,211-233
R11D1.7 7 10-27,39-58,73-95,100-122,137-159,179-201,211-233
SNAP00000040854 5 4-22,29-51,66-88,108-130,140-162
GENEFINDER00000040867 7 10-27,39-58,73-95,100-122,137-159,179-201,211-233
Sequence
Target Sequence 
>C. ELEGANS:178170_AT
tatttctccttgctgttctattgaaggtcactgaggatgatgaagttttgtcaggagcat
tacgtgcaatactattcattagtccgttttataattggatttttgtaatactaatcaatt
gtcaagatcctgaaaaaaggactgagttgaagaaatcaattgagcgagctcttcgtggaa
taaaaaccggtccagtacctcgtatcaacgttcaagaaccaacgagcagttcgaatttgc
catcacgaagccatattgctttgaaccttatgaaaaacccactaaattcattcaacaaac
tacaacgacaatctacaattcccgccggagaaatgcccccacaaagtagtttgatggttc
caagagagcaaagatatttggcttctgctgaacaagaagacatcgaacaagtttcgtctc
ctcaggaaattttgagttcgcgaagttccgaggagagaggatttatgactgttgcattgc
tcagaagggcatctcaaatgagtcaaagatttcaaagtatacgtggtgacacacctcgta
ctgattcagcacgttcacataatacacccacacccaggtctccaaaaaatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTCTCCTTGCTGTTCTATTGAA 226 663 593 Antisense
TCCAGTACCTCGTATCAACGTTCAA 186 591 783 Antisense
CGAGCAGTTCGAATTTGCCATCACG 245 251 815 Antisense
TTTGCCATCACGAAGCCATATTGCT 260 669 828 Antisense
TACAACGACAATCTACAATTCCCGC 683 641 893 Antisense
TACAATTCCCGCCGGAGAAATGCCC 337 639 906 Antisense
ATCGAACAAGTTTCGTCTCCTCAGG 167 37 994 Antisense
GTTGCATTGCTCAGAAGGGCATCTC 476 439 1063 Antisense
ATACGTGGTGACACACCTCGTACTG 280 23 1111 Antisense
TCAGCACGTTCACATAATACACCCA 313 625 1138 Antisense
CACACCCAGGTCTCCAAAAAATCCA 666 185 1161 Antisense
Sequence Source Affymetrix Proprietary Database