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[178169_at]

Description ZC455.1 /REP_DB=WormBase Gene ID /WP=CE24703 /TR=Q23332 /GB=CAA99953.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 60      6grp_total > 17      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 523
1 2 3 4 range
A 536.9
(-0.1)
P 		330.2
(-2.7)
P 		304.7
(-3)
P 		782.3
(3)
P 		478
B 431.9
(-0.7)
P 		327.3
(-2.1)
P 		265.3
(-3)
P 		691.9
(3)
P 		427
C 509.5
(0.5)
P 		396.3
(-1.1)
P 		259.3
(-3)
P 		685.2
(3)
P 		426
avr 492.8
(-0.1) 		351.3
(-2) 		276.4
(-3) 		719.8
(3) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 567
1 2 3 4 5 6 range
A 854.4
(3)
P 		458.4
(-1.2)
P 		308.4
(-2.8)
P 		289.4
(-3)
P 		382.2
(-2)
P 		417.1
(-1.6)
P 		565
B 443.1
(3)
P 		391.4
(0.7)
P 		308.2
(-3)
P 		345.4
(-1.3)
P 		345.9
(-1.3)
P 		349.9
(-1.1)
P 		135
C 438.4
(3)
P 		429.6
(2.6)
P 		337.7
(-1)
P 		358.7
(-0.2)
P 		287.7
(-3)
P 		355.9
(-0.3)
P 		151
avr 578.6
(3) 		426.5
(-0.5) 		318.1
(-3) 		331.2
(-2.7) 		338.6
(-2.5) 		374.3
(-1.7) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 195.5
(3)
P 		71.7
(-3)
P 		79.7
(-2.6)
P 		114.5
(-0.9)
P 		124
B 137.7
(2.3)
P 		80.8
(-1.7)
P 		61.5
(-3)
P 		147.4
(3)
P 		86
C 168.7
(3)
P 		113.9
(-1.2)
P 		90.4
(-3)
P 		115.5
(-1.1)
P 		78
avr 167.3
(3) 		88.8
(-2.2) 		77.2
(-3) 		125.8
(0.2) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 157.5
(2.7)
P 		163
(3)
P 		67.2
(-3)
P 		73.4
(-2.6)
P 		115.3
(0)
P 		101.6
(-0.8)
P 		96
B 154.2
(3)
P 		130.3
(1.2)
P 		74.8
(-3)
P 		91.5
(-1.7)
P 		140.5
(2)
P 		130.5
(1.2)
P 		79
C 162.5
(3)
P 		131.1
(0.9)
P 		86
(-2.1)
P 		72.1
(-3)
P 		93.1
(-1.6)
P 		119.1
(0.1)
P 		90
avr 158.1
(3) 		141.5
(1.8) 		76
(-3) 		79
(-2.8) 		116.3
(-0.1) 		117.1
(0) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178169_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13355
Sequence Type Exemplar sequence
Representative Public ID ZC455.1 NCBI
Target Description ZC455.1 /REP_DB=WormBase Gene ID /WP=CE24703 /TR=Q23332 /GB=CAA99953.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073794 NCBI Caenorhabditis elegans ZC455.1 (ZC455.1) mRNA, complete cds. 11/11 None
SNAP00000034468 ENSEMBL cdna:SNAP chromosome:CEL140:V:12781914:12785475:1 9/11 None
GENEFINDER00000034478 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12781914:12785522:1 11/11 None
ZC455.1 ENSEMBL cdna:known chromosome:CEL140:V:12781850:12785635:1 gene:ZC455.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12781877-12785475(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC455.1
Entrez Gene 179751 Entrez gene
SwissProt Q23332 EMBL-EBI
WormBase CE32034 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99953 Hypothetical protein ZC455.1 [Caenorhabditis elegans] ref|NP_506195.2| ZC455.1 [Caenorhabditis elegans] 0.0
blast CAE63995 Hypothetical protein CBG08588 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178169_AT
agagcttgtcagtttcattcttcttcaagttcttcaagctctgaaaatgttacaaggaga
aggcgtggagtcgctgagcacaaatttcaaagaattcttattagcataccgatatccaaa
tgtaaattcttcatataatgagttcccaagacttttgttcctgccggaaacacttggagc
agaaattgaaagcggcggcgatgaactagtcggcctttgccgttatgctctgcgagcact
ttgtacattacttcaccacaaaatggatggaaaagcacctccaatccaattacgatcacg
attctcaagggcattgtcagcttgtgccgttctccttcaagaagataaatcaaatagttt
aacaaaagccaaaaatgtaatggaattggcattatggtccggtggtgaacatttcaaaaa
tgagcaagatgtgaagatatggattgatactgcacgtgccgattgtgtagatactttgct
tcgccaaatgattcgagaaccgaatcgccagcttggtgctcgagaaagattccgcgtcga
attcttgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCTTGTCAGTTTCATTCTTCTT 606 69 1494 Antisense
TGAGTTCCCAAGACTTTTGTTCCTG 55 569 1632 Antisense
GTTCCTGCCGGAAACACTTGGAGCA 456 441 1650 Antisense
GCGGCGGCGATGAACTAGTCGGCCT 257 291 1685 Antisense
CTAGTCGGCCTTTGCCGTTATGCTC 393 225 1699 Antisense
GCTCTGCGAGCACTTTGTACATTAC 705 299 1720 Antisense
AAGCACCTCCAATCCAATTACGATC 583 149 1766 Antisense
TTGTGCCGTTCTCCTTCAAGAAGAT 319 707 1815 Antisense
GATACTGCACGTGCCGATTGTGTAG 527 423 1939 Antisense
AGAACCGAATCGCCAGCTTGGTGCT 695 73 1989 Antisense
AAGATTCCGCGTCGAATTCTTGCTC 513 155 2019 Antisense
Sequence Source Affymetrix Proprietary Database