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[178168_at]

Description T01G9.1 /REP_DB=WormBase Gene ID /WP=CE13010 /TR=Q93966 /GB=CAB00055.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 41      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 62.1
(-3)
A 		215.8
(2.3)
A 		236.3
(3)
A 		119.9
(-1)
A 		174
B 34.4
(-3)
A 		284.6
(3)
P 		232
(1.7)
P 		117.2
(-1)
A 		250
C 69.3
(-3)
A 		238.7
(3)
P 		237.5
(3)
P 		143.8
(-0.4)
A 		169
avr 55.3
(-3) 		246.4
(3) 		235.3
(2.7) 		127
(-0.7) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 148.9
(1.2)
A 		207.4
(3)
P 		153
(1.3)
P 		176.2
(2)
P 		131.2
(0.6)
A 		17.5
(-3)
A 		190
B 132.6
(0.4)
M 		199.7
(3)
P 		152.2
(1.1)
A 		175.4
(2.1)
P 		139.9
(0.7)
M 		46.1
(-3)
A 		154
C 154.6
(-0)
P 		212.8
(3)
P 		150
(-0.3)
A 		149.6
(-0.3)
A 		131.7
(-1.2)
A 		97.1
(-3)
A 		116
avr 145.4
(0.6) 		206.6
(3) 		151.7
(0.8) 		167.1
(1.5) 		134.3
(0.2) 		53.6
(-3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 22.6
(-2.3)
A 		46.9
(1)
A 		61.8
(3)
A 		17.6
(-3)
A 		44
B 11
(-3)
A 		70.3
(3)
P 		53.8
(1.3)
P 		25
(-1.6)
A 		59
C 22.9
(-3)
A 		68.6
(1.6)
P 		82.8
(3)
P 		24.2
(-2.9)
A 		60
avr 18.8
(-3) 		61.9
(2.5) 		66.1
(3) 		22.3
(-2.6) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 27.4
(-1)
A 		73.8
(3)
P 		33.3
(-0.5)
P 		44.7
(0.5)
P 		39.6
(0)
A 		4.3
(-3)
A 		70
B 46.1
(0.5)
M 		66.5
(3)
P 		37
(-0.6)
A 		46.5
(0.6)
P 		56.8
(1.8)
M 		17.2
(-3)
A 		49
C 57.3
(1.7)
P 		64.9
(3)
P 		38.2
(-1.6)
A 		30.1
(-3)
A 		42.6
(-0.8)
A 		32.5
(-2.6)
A 		35
avr 43.6
(0) 		68.4
(3) 		36.2
(-0.8) 		40.4
(-0.3) 		46.3
(0.4) 		18
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178168_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1145
Sequence Type Exemplar sequence
Representative Public ID T01G9.1 NCBI
Target Description T01G9.1 /REP_DB=WormBase Gene ID /WP=CE13010 /TR=Q93966 /GB=CAB00055.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059850(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059850 NCBI Caenorhabditis elegans T01G9.1 (T01G9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000040997 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8281188:8283637:1 11/11 None
SNAP00000040989 ENSEMBL cdna:SNAP chromosome:CEL140:I:8281205:8283637:1 11/11 None
T01G9.1 ENSEMBL cdna:known chromosome:CEL140:I:8282137:8283826:1 gene:T01G9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8282067-8283568(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01G9.1
Entrez Gene 187967 Entrez gene
SwissProt Q93966 EMBL-EBI
WormBase CE13010 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00055 Hypothetical protein T01G9.1 [Caenorhabditis elegans] ref|NP_492251.1| T01G9.1 [Caenorhabditis elegans] 1.0E-106
blast CAB00055 Hypothetical protein T01G9.1 [Caenorhabditis elegans] ref|NP_492251.1| T01G9.1 [Caenorhabditis elegans] 4.0E-96
blast CAE60480 Hypothetical protein CBG04093 [Caenorhabditis briggsae] 3.0E-81
blast CAE60480 Hypothetical protein CBG04093 [Caenorhabditis briggsae] 4.0E-78
blast CAB03520 Hypothetical protein ZK265.8 [Caenorhabditis elegans] emb|CAB00057.1| Hypothetical protein ZK265.8 [Caenorhabditis elegans] ref|NP_492250.1| ZK265.8 [Caenorhabditis elegans] 3.0E-45
blast CAB03520 Hypothetical protein ZK265.8 [Caenorhabditis elegans] emb|CAB00057.1| Hypothetical protein ZK265.8 [Caenorhabditis elegans] ref|NP_492250.1| ZK265.8 [Caenorhabditis elegans] 2.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492251.1 1 169-191
T01G9.1 1 169-191
GENEFINDER00000040997 1 251-273
SNAP00000040989 1 244-266
Sequence
Target Sequence 
>C. ELEGANS:178168_AT
cgattccgccgaatttgaccgatctgctcgccaatctacccgatgacattagcagtgaca
gtattcagaaaatgttgagagactccgtggacaatccaaaagcattgctcgcagaatttg
gaaaattaatgaaaaataagaaactgaaagcggaacgaaagaatcgatcgagaaatctac
gagaattgaaaccgggagacttgagatctggggagaaaattgatcagattgaggttgatt
ggacatcaaccagaagacgagatgtcccagcaataccagaatttgatggaaattcgaaat
atgataagcctatgttggctggtcagttgctcattttcgatttggatgaagagccaccaa
atgatgtcggactagacaaaaattcaacaaaggatgcatccacagcgtgttctgtaacaa
aagatggtcttcttgcaatatttgctggatttggagcaattctagcagcactaatttcgg
ctattggatttttgataattagactgaaaagtcagacgaccccaatcgatcaagcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTCCGCCGAATTTGACCGATCT 408 247 86 Antisense
TCGCCAATCTACCCGATGACATTAG 614 597 113 Antisense
GTTGAGAGACTCCGTGGACAATCCA 145 439 159 Antisense
ACGAGATGTCCCAGCAATACCAGAA 378 93 342 Antisense
GCCTATGTTGGCTGGTCAGTTGCTC 295 281 393 Antisense
GTCAGTTGCTCATTTTCGATTTGGA 176 467 407 Antisense
GAGCCACCAAATGATGTCGGACTAG 80 385 436 Antisense
GATGCATCCACAGCGTGTTCTGTAA 540 413 478 Antisense
AGATGGTCTTCTTGCAATATTTGCT 463 67 507 Antisense
GATTTGGAGCAATTCTAGCAGCACT 513 427 533 Antisense
AGACGACCCCAATCGATCAAGCAAC 440 69 599 Antisense
Sequence Source Affymetrix Proprietary Database