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[178167_at]

Description C08B6.6 /REP_DB=WormBase Gene ID /WP=CE05243 /TR=Q17822 /GB=CAA96593.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 0.9
(-3)
A 		3.2
(-2.1)
A 		1
(-3)
A 		16.1
(3)
A 		15
B 1.2
(-2.9)
A 		17.1
(3)
A 		1.4
(-2.8)
A 		0.8
(-3)
A 		16
C 4.3
(3)
A 		0.8
(-2.8)
A 		0.7
(-3)
A 		1.5
(-1.7)
A 		4
avr 2.1
(-1.9) 		7
(3) 		1
(-3) 		6.1
(2.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 1.5
(-2.9)
A 		2.1
(-2.8)
A 		2.7
(-2.7)
A 		1
(-3)
A 		33.1
(3)
A 		1.4
(-2.9)
A 		32
B 0.3
(-3)
A 		3.7
(-2.1)
A 		23.4
(3)
A 		1
(-2.8)
A 		3.8
(-2.1)
A 		1.5
(-2.7)
A 		23
C 0.4
(-3)
A 		13.1
(3)
A 		0.6
(-2.9)
A 		1.2
(-2.6)
A 		0.6
(-2.9)
A 		2.1
(-2.2)
A 		13
avr 0.7
(-3) 		6.3
(-0.2) 		8.9
(1.2) 		1.1
(-2.8) 		12.5
(3) 		1.7
(-2.5) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.3
(-3)
A 		0.7
(-1.9)
A 		0.3
(-3)
A 		2.4
(3)
A 		2
B 0.4
(-2.7)
A 		4.2
(3)
A 		0.3
(-2.9)
A 		0.2
(-3)
A 		4
C 1.4
(3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.2
(-3)
A 		1
avr 0.7
(-1.3) 		1.7
(3) 		0.3
(-3) 		0.9
(-0.4) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.3
(-2.9)
A 		0.8
(-2.6)
A 		0.6
(-2.8)
A 		0.2
(-3)
A 		10
(3)
A 		0.3
(-2.9)
A 		10
B 0.1
(-3)
A 		1.2
(-1.8)
A 		5.7
(3)
A 		0.3
(-2.8)
A 		1.5
(-1.5)
A 		0.6
(-2.5)
A 		6
C 0.1
(-3)
A 		4
(3)
A 		0.1
(-3)
A 		0.2
(-2.8)
A 		0.2
(-2.8)
A 		0.7
(-2.1)
A 		4
avr 0.2
(-3) 		2
(-0.1) 		2.1
(0.1) 		0.2
(-3) 		3.9
(3) 		0.5
(-2.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12433
Sequence Type Exemplar sequence
Representative Public ID C08B6.6 NCBI
Target Description C08B6.6 /REP_DB=WormBase Gene ID /WP=CE05243 /TR=Q17822 /GB=CAA96593.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073201(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073201 NCBI Caenorhabditis elegans C08B6.6 (C08B6.6) mRNA, complete cds. 10/11 None
C08B6.6 ENSEMBL cdna:known chromosome:CEL140:V:10126219:10127270:1 gene:C08B6.6 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004966 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10126218-10127270(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08B6.6
Entrez Gene 182391 Entrez gene
SwissProt Q17822 EMBL-EBI
WormBase CE33972 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96593 Hypothetical protein C08B6.6 [Caenorhabditis elegans] ref|NP_505602.2| C08B6.6 [Caenorhabditis elegans] 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:178167_AT
aacactagaggacctgaactcgaagtattatgattttcaagaatccgacacagatgtgaa
ttctttggaacaacgaaaacttatatcttttttaaatttcatgaaagataatgatcgaga
attacttattagtcgtattagaattgatgaagaagacaattcgctgtccaaatttttagt
ggatgcctgggaacttggccataatttccaggaaaaagaaacaggatactatctagaata
cgtggaacatcttggttcgattaaattagaaaatgtgaattcggaatttgaatccgtgtt
tattattaattctatttatgaatgtccgagtcataagcagttttcaatgaatacaaaaaa
ctcaggcaaattccaaaaccgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTAGAGGACCTGAACTCGAAG 512 135 75 Antisense
GATTTTCAAGAATCCGACACAGATG 517 429 106 Antisense
GACACAGATGTGAATTCTTTGGAAC 199 367 121 Antisense
GACAATTCGCTGTCCAAATTTTTAG 431 361 229 Antisense
GTGGATGCCTGGGAACTTGGCCATA 7 491 253 Antisense
GAACTTGGCCATAATTTCCAGGAAA 522 349 265 Antisense
GGATACTATCTAGAATACGTGGAAC 289 505 298 Antisense
ACGTGGAACATCTTGGTTCGATTAA 463 93 314 Antisense
GGAATTTGAATCCGTGTTTATTATT 244 533 357 Antisense
GTCCGAGTCATAAGCAGTTTTCAAT 479 475 398 Antisense
AACTCAGGCAAATTCCAAAACCGAG 491 139 433 Antisense
Sequence Source Affymetrix Proprietary Database