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[178166_at] G-protein coupled receptor, srg family

Description F32H5.5 /REP_DB=WormBase Gene ID /WP=CE09889 /TR=P91994 /GB=CAB04253.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 01      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 25.4
(-3)
A 		27.5
(-2.8)
A 		28.8
(-2.6)
A 		82.5
(3)
P 		57
B 56
(1.1)
A 		22.3
(-3)
A 		71.7
(3)
P 		52.6
(0.7)
P 		49
C 47
(-1.7)
A 		39.2
(-2.2)
A 		23.3
(-3)
A 		137
(3)
P 		114
avr 42.8
(-1.7) 		29.7
(-3) 		41.3
(-1.9) 		90.7
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 8.6
(-2.8)
A 		25.6
(-1.6)
A 		86.4
(3)
A 		29.6
(-1.3)
A 		6.6
(-3)
A 		46.3
(-0)
A 		80
B 25.7
(-2.7)
A 		37.6
(-0.8)
A 		43.5
(0.1)
A 		62.8
(3)
A 		32.7
(-1.6)
A 		23.5
(-3)
A 		39
C 33.4
(1.1)
A 		39.3
(2.9)
A 		32
(0.7)
A 		39.5
(3)
A 		32.8
(0.9)
A 		20.3
(-3)
A 		19
avr 22.6
(-3) 		34.2
(-0.8) 		54
(3) 		44
(1.1) 		24
(-2.7) 		30
(-1.6) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9.3
(0.2)
A 		6
(-3)
A 		7.5
(-1.5)
A 		12.1
(3)
P 		6
B 17.8
(3)
A 		5.5
(-3)
A 		16.6
(2.4)
P 		11.2
(-0.2)
P 		12
C 15.6
(-0)
A 		11.3
(-1.7)
A 		8.1
(-3)
A 		23.1
(3)
P 		15
avr 14.2
(2) 		7.6
(-3) 		10.7
(-0.6) 		15.5
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.6
(-3)
A 		9.1
(-0.4)
A 		18.8
(3)
A 		7.5
(-0.9)
A 		2
(-2.9)
A 		11.3
(0.4)
A 		17
B 8.9
(-2.9)
A 		12.5
(-0.2)
A 		10.6
(-1.6)
A 		16.6
(3)
A 		13.3
(0.5)
A 		8.8
(-3)
A 		8
C 12.4
(3)
A 		12
(2.6)
A 		8.2
(-1.5)
A 		8
(-1.7)
A 		10.6
(1.1)
A 		6.8
(-3)
A 		6
avr 7.6
(-3) 		11.2
(1.4) 		12.5
(3) 		10.7
(0.8) 		8.6
(-1.8) 		9
(-1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178166_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13544
Sequence Type Exemplar sequence
Representative Public ID F32H5.5 NCBI
Target Description F32H5.5 /REP_DB=WormBase Gene ID /WP=CE09889 /TR=P91994 /GB=CAB04253.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073913
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000043412 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13366307:13370454:1 None
F32H5.5 ENSEMBL cdna:known chromosome:CEL140:V:13366307:13367320:1 gene:F32H5.5 None
NM_073913 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-46) (srg-46) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13366306-13368242(+) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srg family
Gene Symbol srg-46
Ensembl F32H5.5
Entrez Gene 185217 Entrez gene
SwissProt P91994 EMBL-EBI
WormBase CE33066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04253 Hypothetical protein F32H5.5 [Caenorhabditis elegans] ref|NP_506314.2| Serpentine Receptor, class G (gamma) family member (srg-46) [Caenorhabditis elegans] sp|P91994|SRG46_CAEEL Serpentine receptor class gamma-46 (Protein srg-46) 1.0E-154
blast CAB04253 Hypothetical protein F32H5.5 [Caenorhabditis elegans] ref|NP_506314.2| Serpentine Receptor, class G (gamma) family member (srg-46) [Caenorhabditis elegans] sp|P91994|SRG46_CAEEL Serpentine receptor class gamma-46 (Protein srg-46) 1.0E-150
blast CAB03212 Hypothetical protein F32H5.6 [Caenorhabditis elegans] emb|CAB04254.2| Hypothetical protein F32H5.6 [Caenorhabditis elegans] ref|NP_506315.2| Serpentine Receptor, class X family member (srx-125) [Caenorhabditis elegans] 2.0E-39
blast CAE62611 Hypothetical protein CBG06729 [Caenorhabditis briggsae] 3.0E-27
blast CAB01668 Hypothetical protein W09D12.2 [Caenorhabditis elegans] ref|NP_506679.2| Serpentine Receptor, class G (gamma) family member (srg-55) [Caenorhabditis elegans] 3.0E-11
blast AAB69903 Serpentine receptor, class g (gamma) protein 53 [Caenorhabditis elegans] ref|NP_503348.1| Serpentine Receptor, class G (gamma) family member (srg-53) [Caenorhabditis elegans] sp|O16974|SRG53_CAEEL Serpentine receptor class gamma-53 (Protein srg-53) 4.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506314.2 6 7-29,39-57,124-143,153-175,196-213,228-247
F32H5.5 6 7-29,39-57,124-143,153-175,196-213,228-247
GENEFINDER00000043412 7 7-29,39-57,124-143,153-175,196-213,228-247,302-324
Sequence
Target Sequence 
>C. ELEGANS:178166_AT
gatttcaatgttccagtcttttactgaaatgcatttttagattcacatatgctaaatatc
cgtttgccgctgaaatttggaaaaagcactatcggcttattatggtttctacaattttct
atagcatactcttaacaattccgtttgtttttatcacaaaggaacatcatggatttgact
attacgcatttacaatgaatattgaaactgtaatctatttactattgaccatttacttgg
gccgcctaacaaaactatcactaaagaagcgatcaaagcggtttgcggaaagtatcaaaa
aattgaataactacatttattgtgacttatttattcacggagttgcattcttcggtgtca
tgattccaaagatgttatctttcgaatggactgaagaaactaaagattacattcttacat
ttaccgtagacgctgcacataatttttcgaaacttctttccaaaatgttcttaacaacaa
agttctatcaccagctctcacgtgttttggatggttacgagaagtttacaagaattataa
tttgtactgctttcttttaccatttttcaattcattcccaaaaaccctcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCAATGTTCCAGTCTTTTACT 170 429 287 Antisense
TATGCTAAATATCCGTTTGCCGCTG 458 657 334 Antisense
GCACTATCGGCTTATTATGGTTTCT 151 317 372 Antisense
ATAGCATACTCTTAACAATTCCGTT 189 23 407 Antisense
TATTGACCATTTACTTGGGCCGCCT 416 663 509 Antisense
GAGTTGCATTCTTCGGTGTCATGAT 37 399 626 Antisense
TACATTTACCGTAGACGCTGCACAT 537 643 702 Antisense
CAACAAAGTTCTATCACCAGCTCTC 459 189 761 Antisense
CAGCTCTCACGTGTTTTGGATGGTT 708 203 778 Antisense
TACTGCTTTCTTTTACCATTTTTCA 453 647 831 Antisense
CAATTCATTCCCAAAAACCCTCAGA 421 179 854 Antisense
Sequence Source Affymetrix Proprietary Database