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[178165_at]

Description F46F3.3 /REP_DB=WormBase Gene ID /WP=CE10590 /TR=P90877 /GB=CAB03113.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 2.5
(-3)
A 		130.3
(3)
P 		126
(2.8)
P 		50.1
(-0.8)
A 		128
B 18.2
(-2.5)
A 		149.6
(2.6)
P 		160.8
(3)
P 		5.2
(-3)
A 		156
C 29
(-3)
A 		136.2
(3)
P 		132.1
(2.8)
P 		64
(-1)
M 		107
avr 16.6
(-3) 		138.7
(3) 		139.6
(3) 		39.8
(-1.9) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 803
1 2 3 4 5 6 range
A 27.9
(-3)
A 		142.3
(-2.1)
M 		407
(-0.2)
P 		828.9
(3)
P 		428.9
(0)
P 		87.2
(-2.6)
A 		801
B 27.3
(-3)
A 		171.2
(-1.7)
P 		314.3
(-0.4)
P 		682.9
(3)
P 		489.9
(1.2)
P 		130
(-2.1)
P 		656
C 26
(-3)
A 		162
(-1.9)
P 		148.5
(-2)
P 		739.3
(3)
P 		327
(-0.5)
P 		143.8
(-2)
P 		713
avr 27.1
(-3) 		158.5
(-1.9) 		289.9
(-0.8) 		750.4
(3) 		415.3
(0.2) 		120.3
(-2.2) 		723
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 0.9
(-3)
A 		28.3
(2.1)
P 		32.9
(3)
P 		7.3
(-1.8)
A 		32
B 5.8
(-2.2)
A 		36.9
(2.9)
P 		37.3
(3)
P 		1.1
(-3)
A 		36
C 9.6
(-3)
A 		39.2
(1.9)
P 		46.1
(3)
P 		10.8
(-2.8)
M 		37
avr 5.4
(-3) 		34.8
(2.3) 		38.8
(3) 		6.4
(-2.8) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 5.1
(-3)
A 		50.6
(-1.7)
M 		88.6
(-0.6)
P 		210.2
(3)
P 		129.4
(0.6)
P 		21.2
(-2.5)
A 		205
B 9.5
(-3)
A 		57
(-1.5)
P 		76.3
(-0.9)
P 		180.9
(2.4)
P 		199
(3)
P 		48.5
(-1.8)
P 		190
C 9.6
(-3)
A 		49.4
(-1.3)
P 		37.8
(-1.8)
P 		148.7
(3)
P 		105.8
(1.1)
P 		48.1
(-1.3)
P 		139
avr 8.1
(-3) 		52.3
(-1.5) 		67.6
(-0.9) 		179.9
(3) 		144.7
(1.8) 		39.3
(-1.9) 		172
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178165_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12979
Sequence Type Exemplar sequence
Representative Public ID F46F3.3 NCBI
Target Description F46F3.3 /REP_DB=WormBase Gene ID /WP=CE10590 /TR=P90877 /GB=CAB03113.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073552 NCBI Caenorhabditis elegans F46F3.3 (F46F3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000004396 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11669662:11671910:1 9/11 None
F46F3.3 ENSEMBL cdna:known chromosome:CEL140:V:11669662:11671910:1 gene:F46F3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004390 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11669661-11671910(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46F3.3
Entrez Gene 185854 Entrez gene
SwissProt P90877 EMBL-EBI
WormBase CE10590 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03113 Hypothetical protein F46F3.3 [Caenorhabditis elegans] ref|NP_505953.1| F46F3.3 [Caenorhabditis elegans] 1.0E-101
blast CAB03113 Hypothetical protein F46F3.3 [Caenorhabditis elegans] ref|NP_505953.1| F46F3.3 [Caenorhabditis elegans] 3.0E-76
blast CAE75318 Hypothetical protein CBG23290 [Caenorhabditis briggsae] 9.0E-56
blast CAE75318 Hypothetical protein CBG23290 [Caenorhabditis briggsae] 1.0E-55
Sequence
Target Sequence 
>C. ELEGANS:178165_AT
gacatctgtattcttttcgggttcgaataccgatattgtgagaaaatatgtaatatacaa
ttcatttcacggaagtttgaaaaataaatttaaagccgttgtttttggtaacccccttga
aaaactgtatgtgttttttgaaatcagtacattttcaatttcaaaacaagaatttaaatc
tccagaatcccgatcctcagaaagtgaaacaacaaacgaaagcttaatgaaaatggttga
taatgagtggatggataaatttatcccacgagaatataaacgaacacattcactttctgg
atccgatgagcaagatgttacaaaagacaataactttggatatagtgaacaaggaatgaa
ggatctagatgaagttggaggtcttgtcggtggaggagattccgaccttcttggtatcct
tcgtccttactattcaatggttgaaatgaccgccaacggaaacaaacaaggaatgggaca
atatcttcatgtacttcctgattcatcagaaggtgacaccccaatttattcagttggtgg
ctcgatgtacggaggagttgaaccggctggtgcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATCTGTATTCTTTTCGGGTTCG 539 365 51 Antisense
TAACCCCCTTGAAAAACTGTATGTG 83 635 159 Antisense
TTTAAATCTCCAGAATCCCGATCCT 661 671 223 Antisense
ACACATTCACTTTCTGGATCCGATG 426 109 334 Antisense
TCGGTGGAGGAGATTCCGACCTTCT 644 605 437 Antisense
ATCCTTCGTCCTTACTATTCAATGG 615 37 466 Antisense
ATCTTCATGTACTTCCTGATTCATC 451 31 533 Antisense
TGATTCATCAGAAGGTGACACCCCA 148 565 549 Antisense
GGTGACACCCCAATTTATTCAGTTG 293 497 562 Antisense
TTCAGTTGGTGGCTCGATGTACGGA 325 687 579 Antisense
GGAGGAGTTGAACCGGCTGGTGCTA 527 515 601 Antisense
Sequence Source Affymetrix Proprietary Database