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[178164_at]

Description F21H7.5 /REP_DB=WormBase Gene ID /WP=CE15877 /TR=O45386 /GB=CAB07588.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 44      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 8.6
(-1.4)
A 		7.1
(-3)
A 		12.5
(2.6)
A 		12.9
(3)
A 		6
B 28.7
(0.1)
A 		50
(3)
A 		9.7
(-2.5)
A 		6
(-3)
A 		44
C 21.8
(3)
A 		20.2
(2.4)
A 		4.9
(-3)
A 		12.4
(-0.3)
A 		17
avr 19.7
(0.8) 		25.8
(3) 		9
(-3) 		10.4
(-2.5) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 9.4
(-2.9)
A 		7.9
(-3)
A 		5.8
(-3)
A 		57.4
(-2.2)
A 		146.5
(-0.8)
P 		388.2
(3)
P 		382
B 10.3
(-2.9)
A 		7.5
(-3)
A 		12.1
(-2.9)
A 		9.2
(-3)
A 		177.5
(1.3)
P 		247.2
(3)
P 		240
C 11
(-2.9)
A 		6.3
(-3)
A 		9.3
(-2.9)
A 		32.6
(-2.4)
A 		271.6
(2.8)
P 		279.9
(3)
P 		274
avr 10.2
(-2.9) 		7.2
(-3) 		9.1
(-3) 		33.1
(-2.5) 		198.5
(0.9) 		305.1
(3) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.1
(2.3)
A 		1.5
(-3)
A 		3.3
(3)
A 		1.9
(-1.7)
A 		2
B 9.1
(1.2)
A 		12.4
(3)
A 		2.2
(-2.5)
A 		1.3
(-3)
A 		11
C 7.2
(3)
A 		5.8
(1.5)
A 		1.7
(-3)
A 		2.1
(-2.6)
A 		6
avr 6.5
(2.9) 		6.6
(3) 		2.4
(-2.3) 		1.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 1.7
(-3)
A 		2.8
(-2.9)
A 		1.3
(-3)
A 		14.6
(-2.1)
A 		44.2
(-0.2)
P 		94.5
(3)
P 		93
B 3.6
(-2.9)
A 		2.5
(-3)
A 		2.9
(-3)
A 		2.4
(-3)
A 		72.1
(1.7)
P 		92.2
(3)
P 		90
C 4.1
(-2.9)
A 		1.9
(-3)
A 		2.4
(-3)
A 		6.6
(-2.7)
A 		87.9
(2.6)
P 		93.7
(3)
P 		92
avr 3.1
(-2.9) 		2.4
(-3) 		2.2
(-3) 		7.9
(-2.6) 		68.1
(1.3) 		93.5
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178164_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13517
Sequence Type Exemplar sequence
Representative Public ID F21H7.5 NCBI
Target Description F21H7.5 /REP_DB=WormBase Gene ID /WP=CE15877 /TR=O45386 /GB=CAB07588.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074697(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074697 NCBI Caenorhabditis elegans F21H7.5 (F21H7.5) mRNA, complete cds. 11/11 None
SNAP00000014724 ENSEMBL cdna:SNAP chromosome:CEL140:V:16240198:16241295:1 11/11 None
GENEFINDER00000014733 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16240198:16241295:1 11/11 None
F21H7.5 ENSEMBL cdna:known chromosome:CEL140:V:16240142:16241402:1 gene:F21H7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16240197-16241295(+) 88.49 100.0
Public Domain and Genome References
Gene Title
Ensembl F21H7.5
Entrez Gene 180090 Entrez gene
SwissProt O45386 EMBL-EBI
WormBase CE15877 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07588 Hypothetical protein F21H7.5 [Caenorhabditis elegans] ref|NP_507098.1| F21H7.5 [Caenorhabditis elegans] 5.0E-99
blast CAB02773 Hypothetical protein C25D7.2 [Caenorhabditis elegans] ref|NP_506702.1| C25D7.2 [Caenorhabditis elegans] 4.0E-82
blast CAB04318 Hypothetical protein F36D3.4 [Caenorhabditis elegans] ref|NP_507182.1| F36D3.4 [Caenorhabditis elegans] 3.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.7E-30
Sequence
Target Sequence 
>C. ELEGANS:178164_AT
ggaggtcccaagtctgaatcgaagaagctcagacgtgatagcacggacaagtcaaagtca
cagagatccaaaagatcttcgaaatctaagaaatgcgacaagtcctccaagaagtgcgac
ttgaacaaggctaagaacctctgcccaacggttaaccaggcagatgtttccgacgtgtcc
atcaaatcggactccggtgagaaatccgaaaagtcgaaagctctgaagttggttcccaac
cagtcgaagtacacattcccggagggacagggttctgcttcagtgaagacgtcgactctt
cgtgcatcgcccaacaagcttccattcgcaacgaccggaggagttcagacagtcagcatt
gccaacaacaccaagtcgagaaaggcatttaaggtcaaaacttccgacaaccttctctac
cgcgtcaacccagtcttcggatttgttgagccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTCCCAAGTCTGAATCGAAGA 134 517 316 Antisense
AAGAAGCTCAGACGTGATAGCACGG 220 153 337 Antisense
CCTCTGCCCAACGGTTAACCAGGCA 495 265 453 Antisense
GTTAACCAGGCAGATGTTTCCGACG 547 443 466 Antisense
GTGTCCATCAAATCGGACTCCGGTG 225 483 490 Antisense
TGGTTCCCAACCAGTCGAAGTACAC 348 549 545 Antisense
CGGAGGGACAGGGTTCTGCTTCAGT 259 239 575 Antisense
TGAAGACGTCGACTCTTCGTGCATC 417 575 599 Antisense
CTTCCATTCGCAACGACCGGAGGAG 584 219 634 Antisense
GACCGGAGGAGTTCAGACAGTCAGC 398 383 648 Antisense
CCCAGTCTTCGGATTTGTTGAGCCC 478 257 744 Antisense
Sequence Source Affymetrix Proprietary Database