[Home] | [Total List]

[178161_s_at]

Description F57G4.7 /REP_DB=WormBase Gene ID /WP=CE18772 /TR=Q9XUX3 /GB=CAB04509.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 73      6grp_total > 72      4grp_total > 13      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 74.8
(0.2)
P 		64.3
(-0.3)
A 		11.4
(-3)
A 		129.3
(3)
P 		118
B 96.6
(0.9)
A 		31
(-3)
A 		47.6
(-2)
A 		131.9
(3)
P 		101
C 99.3
(-0.3)
P 		41.8
(-2.9)
A 		38.6
(-3)
A 		174
(3)
P 		135
avr 90.2
(0.1) 		45.7
(-2.3) 		32.5
(-3) 		145.1
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 12
(-3)
A 		101.9
(1.4)
P 		68.1
(-0.3)
A 		135.5
(3)
P 		70
(-0.2)
P 		78.4
(0.2)
P 		124
B 66.8
(-3)
P 		92.9
(0.4)
P 		75.5
(-1.9)
P 		112.9
(3)
P 		67.3
(-2.9)
A 		97.4
(1)
P 		46
C 46
(-3)
P 		96.8
(0.2)
P 		141.6
(3)
P 		109.8
(1)
P 		71.7
(-1.4)
P 		72.9
(-1.3)
P 		96
avr 41.6
(-3) 		97.2
(1.3) 		95.1
(1.1) 		119.4
(3) 		69.7
(-0.8) 		82.9
(0.2) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 27.2
(3)
P 		14
(-0.3)
A 		3
(-3)
A 		18.9
(0.9)
P 		24
B 30.8
(3)
A 		7.6
(-3)
A 		11
(-2.1)
A 		28.1
(2.3)
P 		23
C 32.9
(3)
P 		12
(-3)
A 		13.5
(-2.6)
A 		29.3
(2)
P 		21
avr 30.3
(3) 		11.2
(-2.4) 		9.2
(-3) 		25.4
(1.6) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 2.2
(-3)
A 		36.2
(3)
P 		14.8
(-0.8)
A 		34.4
(2.7)
P 		21.1
(0.3)
P 		19.1
(-0)
P 		34
B 23.2
(-1.4)
P 		30.9
(1.2)
P 		18.3
(-3)
P 		29.9
(0.9)
P 		27.3
(0)
A 		36.3
(3)
P 		18
C 17.1
(-3)
P 		29.5
(0.9)
P 		36
(3)
P 		22.1
(-1.4)
P 		23.2
(-1.1)
P 		24.4
(-0.7)
P 		19
avr 14.2
(-3) 		32.2
(3) 		23
(-0.1) 		28.8
(1.9) 		23.9
(0.2) 		26.6
(1.1) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178161_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13583
Sequence Type Exemplar sequence
Representative Public ID F57G4.7 NCBI
Target Description F57G4.7 /REP_DB=WormBase Gene ID /WP=CE18772 /TR=Q9XUX3 /GB=CAB04509.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F57G4.7 ENSEMBL cdna:pseudogene chromosome:CEL140:V:17648072:17650742:-1 gene:F57G4.7 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009863 6/11 Cross Hyb Matching Probes None
GENEFINDER00000009865 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F57G4.7
Sequence
Target Sequence 
>C. ELEGANS:178161_S_AT
aggaacctgatgaaaccactcgaaaatttctatccaaaggaatatcaaagcgccagaaaa
aatttgtttccaaatgaaagattctctaaaaatggtgggcttcctggagatttagtcgtt
aacatcatcaatattatcaaaaaggaagaagttctttggaatgtttctaaaacagtgaaa
gtgaagaatgaagatctccaccagttgtggcgaaatctggaaaaaggagtttcgggtttg
aaatcagataaagataaaatcaatgaggaatcgcaaatactggacgaccaactttcattt
ttgaagaggcaatttgtggagttgaaaaatgacagttcgctcacatccacatccactatc
catgctgatgttattgcaactattactactacactagatgaactgccacttctggaacaa
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAACCTGATGAAACCACTCGAAA 424 55 1114 Antisense
GAAACCACTCGAAAATTTCTATCCA 495 359 1125 Antisense
GATTCTCTAAAAATGGTGGGCTTCC 37 431 1193 Antisense
GGGCTTCCTGGAGATTTAGTCGTTA 225 491 1210 Antisense
GAAGATCTCCACCAGTTGTGGCGAA 41 339 1303 Antisense
AAATACTGGACGACCAACTTTCATT 289 115 1388 Antisense
GTTGAAAAATGACAGTTCGCTCACA 49 437 1434 Antisense
TCCACATCCACTATCCATGCTGATG 42 589 1459 Antisense
TATTGCAACTATTACTACTACACTA 255 663 1485 Antisense
TACTACACTAGATGAACTGCCACTT 475 641 1500 Antisense
GATGAACTGCCACTTCTGGAACAAC 18 411 1510 Antisense
Sequence Source Affymetrix Proprietary Database