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[178160_at]

Description W01B6.8 /REP_DB=WormBase Gene ID /WP=CE03760 /TR=Q23100 /GB=CAA92621.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 7.2
(-3)
A 		46.4
(0.9)
A 		24.2
(-1.3)
A 		67.7
(3)
M 		61
B 32.6
(0.5)
A 		33.2
(0.6)
A 		15.2
(-3)
A 		44.8
(3)
A 		30
C 10.9
(-2.7)
A 		6
(-3)
A 		17.8
(-2.3)
A 		102.5
(3)
A 		97
avr 16.9
(-3) 		28.5
(-1.7) 		19.1
(-2.8) 		71.7
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 29.7
(0.9)
A 		9.7
(-2.1)
A 		27.2
(0.6)
A 		9.8
(-2)
A 		43.6
(3)
A 		3.4
(-3)
A 		40
B 3.3
(-3)
A 		28.2
(0.8)
A 		31.7
(1.3)
A 		32.8
(1.5)
A 		42.7
(3)
A 		31.9
(1.4)
A 		39
C 7.1
(-2.4)
A 		12.8
(-1.5)
A 		3.6
(-3)
A 		40.8
(3)
A 		16.5
(-0.9)
A 		28.4
(1)
A 		37
avr 13.4
(-3) 		16.9
(-2) 		20.8
(-0.9) 		27.8
(1.1) 		34.3
(3) 		21.2
(-0.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.6
(-3)
A 		10.1
(3)
A 		6.3
(-0)
A 		9.9
(2.8)
M 		8
B 10.4
(3)
A 		8.2
(1.1)
A 		3.5
(-3)
A 		9.5
(2.2)
A 		7
C 3.6
(-2.3)
A 		1.7
(-3)
A 		6.2
(-1.3)
A 		17.3
(3)
A 		16
avr 5.5
(-2.8) 		6.7
(-1.8) 		5.3
(-3) 		12.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 5.5
(-0.7)
A 		3.4
(-1.7)
A 		5.9
(-0.5)
A 		2.5
(-2.2)
A 		13.2
(3)
A 		0.8
(-3)
A 		12
B 1.1
(-3)
A 		9.4
(0.1)
A 		7.7
(-0.6)
A 		8.7
(-0.2)
A 		17.3
(3)
A 		11.9
(1)
A 		16
C 2.6
(-1.8)
A 		3.9
(-0.9)
A 		0.9
(-3)
A 		8.2
(2.1)
A 		5.3
(0.1)
A 		9.5
(3)
A 		9
avr 3.1
(-3) 		5.6
(-1.3) 		4.8
(-1.8) 		6.5
(-0.7) 		11.9
(3) 		7.4
(-0.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9734
Sequence Type Exemplar sequence
Representative Public ID W01B6.8 NCBI
Target Description W01B6.8 /REP_DB=WormBase Gene ID /WP=CE03760 /TR=Q23100 /GB=CAA92621.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069427(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069427 NCBI Caenorhabditis elegans W01B6.8 (W01B6.8) mRNA, complete cds. 11/11 None
SNAP00000040432 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10083463:10084210:-1 9/11 None
GENEFINDER00000040440 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10083463:10084345:-1 11/11 None
W01B6.8 ENSEMBL cdna:known chromosome:CEL140:IV:10083463:10084345:-1 gene:W01B6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10083468-10084351(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W01B6.8
Entrez Gene 189084 Entrez gene
SwissProt Q23100 EMBL-EBI
WormBase CE03760 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92621 Hypothetical protein W01B6.8 [Caenorhabditis elegans] ref|NP_501828.1| W01B6.8 [Caenorhabditis elegans] 5.0E-92
blast CAA92621 Hypothetical protein W01B6.8 [Caenorhabditis elegans] ref|NP_501828.1| W01B6.8 [Caenorhabditis elegans] 7.0E-84
blast CAA92621 Hypothetical protein W01B6.8 [Caenorhabditis elegans] ref|NP_501828.1| W01B6.8 [Caenorhabditis elegans] 3.0E-56
blast CAB03050 Hypothetical protein F35C5.1 [Caenorhabditis elegans] ref|NP_496737.2| F35C5.1 [Caenorhabditis elegans] 9.0E-36
blast CAB03050 Hypothetical protein F35C5.1 [Caenorhabditis elegans] ref|NP_496737.2| F35C5.1 [Caenorhabditis elegans] 5.0E-33
blast CAB03050 Hypothetical protein F35C5.1 [Caenorhabditis elegans] ref|NP_496737.2| F35C5.1 [Caenorhabditis elegans] 8.0E-29
blast CAE71483 Hypothetical protein CBG18402 [Caenorhabditis briggsae] 2.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501828.1 1 35-57
W01B6.8 1 35-57
GENEFINDER00000040440 1 35-57
Sequence
Target Sequence 
>C. ELEGANS:178160_AT
tattctgtttttattctggtcgttaatgttacaactcatcattggaacgacttgtgtctc
taaaaattcacagaagagaattgattctctaaaagtaccacgccgggcaccgcaagctca
gagatttaccaattctaggatctcaagtaacaatcaagtttctttgagaaattcacagaa
atctgaaacggaatctgcaaaaactgaaattatcaatgtaccattgggaaaggcagcaaa
agatgaaacatccagcaacatcctcacgccagcaaacaaacaaaaaacagacttgcacac
tgcaccaactagaaaagcacaattcgctgatactttgaaaagagttaaacgaagagccac
aaagccagatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTCTGTTTTTATTCTGGTCGTTA 543 663 123 Antisense
GGTCGTTAATGTTACAACTCATCAT 48 503 140 Antisense
TCATCATTGGAACGACTTGTGTCTC 327 621 158 Antisense
TTCTCTAAAAGTACCACGCCGGGCA 550 691 207 Antisense
GGCACCGCAAGCTCAGAGATTTACC 79 537 228 Antisense
GATTTACCAATTCTAGGATCTCAAG 631 425 245 Antisense
AGATGAAACATCCAGCAACATCCTC 174 67 363 Antisense
ATCCTCACGCCAGCAAACAAACAAA 277 39 382 Antisense
AAAACAGACTTGCACACTGCACCAA 304 131 406 Antisense
AAGCACAATTCGCTGATACTTTGAA 687 151 437 Antisense
ACGAAGAGCCACAAAGCCAGATGAT 619 91 471 Antisense
Sequence Source Affymetrix Proprietary Database