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[178159_at]

Description F44F1.5 /REP_DB=WormBase Gene ID /WP=CE10420 /TR=O02261 /GB=CAB03102.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 77.1
(-3)
A 		118.3
(3)
A 		104.2
(0.9)
A 		100.5
(0.4)
A 		41
B 32.5
(-1.5)
A 		112.9
(3)
A 		37.6
(-1.2)
A 		6.2
(-3)
A 		107
C 76.2
(1.3)
A 		15.3
(-3)
A 		75.1
(1.3)
A 		99.5
(3)
A 		84
avr 61.9
(-3) 		82.2
(3) 		72.3
(0.1) 		68.7
(-1) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 77.2
(0.5)
A 		70.8
(-0.1)
A 		72.6
(0.1)
A 		42.5
(-3)
A 		90.4
(1.9)
A 		101.3
(3)
A 		59
B 30.8
(-3)
A 		50.8
(-1)
A 		91.9
(3)
A 		76.6
(1.5)
A 		54.2
(-0.7)
A 		78.3
(1.7)
A 		61
C 90.9
(2.8)
A 		92.1
(2.9)
A 		45.9
(-0.7)
A 		92.9
(3)
A 		15.7
(-3)
A 		93.5
(3)
A 		78
avr 66.3
(-0.9) 		71.2
(-0.2) 		70.1
(-0.3) 		70.7
(-0.2) 		53.4
(-3) 		91
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 28.1
(3)
A 		25.7
(1.9)
A 		27.2
(2.6)
A 		14.7
(-3)
A 		13
B 10.4
(-0.9)
A 		27.9
(3)
A 		8.7
(-1.3)
A 		1.3
(-3)
A 		27
C 25.2
(2.7)
A 		4.4
(-3)
A 		26.2
(3)
A 		16.8
(0.4)
A 		22
avr 21.2
(3) 		19.3
(1.9) 		20.7
(2.7) 		10.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 14.2
(-1.8)
A 		25.2
(2.2)
A 		15.8
(-1.2)
A 		10.8
(-3)
A 		27.3
(3)
A 		24.7
(2.1)
A 		17
B 10.7
(-3)
A 		16.9
(-1)
A 		22.3
(0.8)
A 		20.3
(0.1)
A 		22
(0.7)
A 		29.2
(3)
A 		19
C 33.7
(3)
A 		28.1
(1.8)
A 		11.7
(-1.6)
A 		18.7
(-0.1)
A 		5.1
(-3)
A 		31.3
(2.5)
A 		29
avr 19.5
(-1.5) 		23.4
(0.5) 		16.6
(-3) 		16.6
(-3) 		18.1
(-2.2) 		28.4
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178159_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2345
Sequence Type Exemplar sequence
Representative Public ID F44F1.5 NCBI
Target Description F44F1.5 /REP_DB=WormBase Gene ID /WP=CE10420 /TR=O02261 /GB=CAB03102.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060927(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060927 NCBI Caenorhabditis elegans F44F1.5 (F44F1.5) mRNA, complete cds. 11/11 None
F44F1.5 ENSEMBL cdna:known chromosome:CEL140:I:13266292:13268336:-1 gene:F44F1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015370 8/11 Cross Hyb Matching Probes None
GENEFINDER00000015377 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13266222-13268267(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44F1.5
Entrez Gene 185747 Entrez gene
SwissProt O02261 EMBL-EBI
WormBase CE10420 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03102 Hypothetical protein F44F1.5 [Caenorhabditis elegans] ref|NP_493328.1| F44F1.5 [Caenorhabditis elegans] 0.0
blast CAB03104 Hypothetical protein F44F1.4 [Caenorhabditis elegans] ref|NP_493331.1| F44F1.4 [Caenorhabditis elegans] 1.0E-131
blast CAB54248 Hypothetical protein F44F1.6a [Caenorhabditis elegans] ref|NP_493329.1| F44F1.6a [Caenorhabditis elegans] 1.0E-130
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493328.1 1 621-643
F44F1.5 1 621-643
Sequence
Target Sequence 
>C. ELEGANS:178159_AT
atctctcattgcatccatggaaactaaaaaacagaataagaatctcaagaagagcttggc
ggaaaaggaaaaactgattgagaagttgaaggtggaaatcaccgaaaaaacaactcaagg
gaaaagtggccaaatgagaggtaggaatttgatatttcacttttcaaacatattatttac
taaaatcatttcagaacactctgtgcaccatcgtaatgtcaatcctgtttccaagaccaa
cgctcggccatcaccaagaaatatggaagaagtctttggtgtaacctatccaccacaata
cgctggaacagcccgggtaacagcagccgccataaccggcgttgtgaataaatatatgtt
ttcttacaattttcatgttcgtttcttaatgttccatttgccaatttttctttcaaataa
atgtattacatcacttttgagaagtttttcaaatttttcattgcatacaccaattcatga
tttcatcgtcctttttttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCTCATTGCATCCATGGAAACT 216 33 1392 Antisense
AGAACACTCTGTGCACCATCGTAAT 461 73 1584 Antisense
GCACCATCGTAATGTCAATCCTGTT 341 315 1596 Antisense
TCAATCCTGTTTCCAAGACCAACGC 383 633 1610 Antisense
ACGCTCGGCCATCACCAAGAAATAT 133 91 1631 Antisense
GAAGTCTTTGGTGTAACCTATCCAC 8 337 1660 Antisense
AACCTATCCACCACAATACGCTGGA 480 145 1674 Antisense
CTGGAACAGCCCGGGTAACAGCAGC 203 241 1694 Antisense
TAACAGCAGCCGCCATAACCGGCGT 242 639 1709 Antisense
TGTTCGTTTCTTAATGTTCCATTTG 126 563 1767 Antisense
ATGATTTCATCGTCCTTTTTTTCTA 2 47 1868 Antisense
Sequence Source Affymetrix Proprietary Database