[Home] | [Total List]

[178158_at] G-protein coupled receptor, srh family

Description R08H2.7 /REP_DB=WormBase Gene ID /WP=CE12606 /TR=O17990 /GB=CAB04633.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 24      6grp_cgc > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.5
(-3)
A 		4.2
(-1.1)
A 		5.7
(3)
A 		4.8
(0.5)
A 		2
B 4
(-3)
A 		8.3
(-0.1)
A 		12.9
(3)
A 		5.6
(-1.9)
A 		9
C 3.8
(-2.5)
A 		5
(-2)
A 		2.7
(-3)
A 		16.9
(3)
A 		14
avr 3.8
(-3) 		5.8
(-0.7) 		7.1
(0.7) 		9.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 11.1
(3)
A 		4.7
(-2.6)
A 		4.2
(-3)
A 		4.4
(-2.8)
A 		7.2
(-0.4)
A 		6
(-1.4)
A 		7
B 4
(0.9)
A 		4.5
(2.2)
A 		4.8
(3)
A 		2.5
(-3)
A 		4.8
(3)
A 		3.3
(-0.9)
A 		2
C 5
(-1.8)
A 		10.6
(3)
A 		3.6
(-3)
A 		8.3
(1)
A 		4.4
(-2.3)
A 		3.9
(-2.7)
A 		7
avr 6.7
(3) 		6.6
(2.8) 		4.2
(-3) 		5.1
(-0.8) 		5.5
(0.1) 		4.4
(-2.5) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(1.5)
A 		0.9
(-1.5)
A 		1.5
(3)
A 		0.7
(-3)
A 		1
B 1.3
(-2.7)
A 		2
(-0.3)
A 		3
(3)
A 		1.2
(-3)
A 		2
C 1.3
(-1.8)
A 		1.4
(-1.5)
A 		0.9
(-3)
A 		2.9
(3)
A 		2
avr 1.3
(-3) 		1.4
(-1.8) 		1.8
(3) 		1.6
(0.6) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 2
(2.1)
A 		1.7
(0.7)
A 		0.9
(-3)
A 		1.1
(-2.1)
A 		2.2
(3)
A 		1.5
(-0.2)
A 		1
B 1.4
(0.2)
A 		1.5
(0.7)
A 		1.2
(-0.7)
A 		0.7
(-3)
A 		2
(3)
A 		1.2
(-0.7)
A 		1
C 1.8
(-0.7)
A 		3.2
(3)
A 		0.9
(-3)
A 		1.7
(-0.9)
A 		1.4
(-1.7)
A 		1.3
(-2)
A 		2
avr 1.7
(0.8) 		2.1
(3) 		1
(-3) 		1.2
(-1.9) 		1.9
(1.9) 		1.3
(-1.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13292
Sequence Type Exemplar sequence
Representative Public ID R08H2.7 NCBI
Target Description R08H2.7 /REP_DB=WormBase Gene ID /WP=CE12606 /TR=O17990 /GB=CAB04633.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074415 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-52) (srh-52) mRNA, complete cds. 11/11 None
GENEFINDER00000012532 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15377486:15382503:-1 9/11 None
R08H2.7 ENSEMBL cdna:known chromosome:CEL140:V:15377486:15378909:-1 gene:R08H2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012524 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15377485-15378909(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-52
Ensembl R08H2.7
Entrez Gene 187714 Entrez gene
SwissProt O17990 EMBL-EBI
WormBase CE12606 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04633 Hypothetical protein R08H2.7 [Caenorhabditis elegans] ref|NP_506816.1| Serpentine Receptor, class H family member (srh-52) [Caenorhabditis elegans] 0.0
blast CAB05806 Hypothetical protein T09F5.5 [Caenorhabditis elegans] ref|NP_506739.2| Serpentine Receptor, class H family member (srh-55) [Caenorhabditis elegans] 1.0E-105
blast CAB04633 Hypothetical protein R08H2.7 [Caenorhabditis elegans] ref|NP_506816.1| Serpentine Receptor, class H family member (srh-52) [Caenorhabditis elegans] 8.0E-92
blast CAB04630 Hypothetical protein R08H2.4 [Caenorhabditis elegans] ref|NP_506819.1| Serpentine Receptor, class H family member (srh-251) [Caenorhabditis elegans] 5.0E-81
blast CAB07488 Hypothetical protein T19C9.3 [Caenorhabditis elegans] ref|NP_507362.1| Serpentine Receptor, class H family member (srh-252) [Caenorhabditis elegans] 6.0E-64
blast T24759 hypothetical protein T09F5.6 - Caenorhabditis elegans 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.7E-82
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-39
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506816.1 7 27-49,62-84,104-126,146-165,208-230,250-272,287-309
R08H2.7 7 27-49,62-84,104-126,146-165,208-230,250-272,287-309
GENEFINDER00000012532 8 13-35,63-85,92-111,131-153,190-207,256-278,366-388,403-422
Sequence
Target Sequence 
>C. ELEGANS:178158_AT
gaattgcttggcttacagtactccctccgtatctggaaaagttggactctgagagactgg
ctatggattttttaaagaatgtcccatgtcctgacaaggaatacttcaatatttctctat
tttttatctgtgacaaccctctcatgctaacctcattgatgggatttcaattcctaaccc
tcacaagtcaaggagtattttatgtttctcacacctggtatcaccttgtcttcctccacg
gttcacgggtgtctgcggagactcgtaaaatgcaactccgtttcttctggggaactcttc
tacaagttctgattcctatgctggtattcatggggccaatcagttatatctggtattcag
ctaacacgggatattataaccaagcaatcaataaccatatctcattcacggtttcatttc
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGCTTGGCTTACAGTACTCCC 504 323 473 Antisense
GTACTCCCTCCGTATCTGGAAAAGT 432 457 490 Antisense
TTTTTATCTGTGACAACCCTCTCAT 522 675 593 Antisense
CCTCTCATGCTAACCTCATTGATGG 517 267 610 Antisense
GGGATTTCAATTCCTAACCCTCACA 349 495 633 Antisense
TATGTTTCTCACACCTGGTATCACC 300 655 673 Antisense
TCACGGGTGTCTGCGGAGACTCGTA 610 625 715 Antisense
TAAAATGCAACTCCGTTTCTTCTGG 556 639 738 Antisense
TTTCTTCTGGGGAACTCTTCTACAA 599 671 753 Antisense
TACAAGTTCTGATTCCTATGCTGGT 185 643 773 Antisense
TATCTCATTCACGGTTTCATTTCAC 199 659 870 Antisense
Sequence Source Affymetrix Proprietary Database