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[178156_at]

Description T04H1.5 /REP_DB=WormBase Gene ID /WP=CE13175 /TR=Q22178 /GB=CAB01582.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_high_8_8 > 02      6grp_highest_nonorm > 91      6grp_total > 78      4grp_total > 31      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 193
(3)
P 		143
(-0.8)
M 		153.5
(0)
P 		113.5
(-3)
A 		80
B 151.8
(0.4)
P 		154.9
(0.7)
P 		113.4
(-3)
P 		181.1
(3)
P 		68
C 170.9
(2.3)
P 		124.9
(-3)
P 		158
(0.8)
P 		176.9
(3)
A 		52
avr 171.9
(3) 		140.9
(-3) 		141.6
(-2.9) 		157.2
(0.2) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 387
1 2 3 4 5 6 range
A 145.5
(-2)
P 		130.1
(-2.4)
P 		206.3
(-0.4)
P 		108.1
(-3)
P 		216
(-0.1)
P 		330.7
(3)
P 		223
B 169.8
(-2.6)
P 		151.4
(-3)
P 		154.6
(-2.9)
P 		162.8
(-2.8)
P 		291.3
(-0)
P 		435
(3)
P 		284
C 193
(-2.1)
P 		195.7
(-2.1)
P 		141.2
(-3)
P 		163.5
(-2.6)
P 		203.9
(-1.9)
P 		494.8
(3)
P 		354
avr 169.4
(-2.5) 		159.1
(-2.7) 		167.4
(-2.5) 		144.8
(-3) 		237.1
(-1) 		420.2
(3) 		275
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 70.3
(3)
P 		31
(-1.4)
M 		40.1
(-0.4)
P 		16.6
(-3)
A 		54
B 48.4
(3)
P 		38.3
(0.3)
P 		26.3
(-3)
P 		38.6
(0.3)
P 		22
C 56.6
(3)
P 		35.9
(-1.6)
P 		55.1
(2.7)
P 		29.8
(-3)
A 		27
avr 58.4
(3) 		35.1
(-1.6) 		40.5
(-0.6) 		28.3
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 26.8
(-3)
P 		46.3
(-0.8)
P 		44.9
(-1)
P 		27.4
(-2.9)
P 		65.2
(1.3)
P 		80.5
(3)
P 		54
B 59.1
(-2)
P 		50.4
(-2.4)
P 		37.5
(-3)
P 		43.1
(-2.7)
P 		118.4
(0.9)
P 		162.2
(3)
P 		125
C 71.6
(-1.3)
P 		59.7
(-1.8)
P 		35.9
(-2.9)
P 		32.9
(-3)
P 		66
(-1.5)
P 		165.6
(3)
P 		133
avr 52.5
(-1.9) 		52.1
(-2) 		39.4
(-2.7) 		34.5
(-3) 		83.2
(-0.1) 		136.1
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13280
Sequence Type Exemplar sequence
Representative Public ID T04H1.5 NCBI
Target Description T04H1.5 /REP_DB=WormBase Gene ID /WP=CE13175 /TR=Q22178 /GB=CAB01582.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073670 NCBI Caenorhabditis elegans T04H1.5 (T04H1.5) mRNA, complete cds. 11/11 None
SNAP00000026402 ENSEMBL cdna:SNAP chromosome:CEL140:V:12253935:12254937:1 11/11 None
GENEFINDER00000026406 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12253935:12254937:1 11/11 None
T04H1.5 ENSEMBL cdna:known chromosome:CEL140:V:12253935:12254937:1 gene:T04H1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12253934-12254937(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04H1.5
Entrez Gene 179679 Entrez gene
SwissProt Q22178 EMBL-EBI
WormBase CE13175 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599926_AT similar to CG10053-PA cfa
CANINE_2:CFA.17827.1.S1_AT similar to CG10053-PA cfa
CANINE_2:CFAAFFX.10031.1.S1_AT similar to CG10053-PA cfa
CANINE_2:CFAAFFX.10031.1.S1_S_AT similar to CG10053-PA cfa
CANINE_2:CFAAFFX.11387.1.S1_AT similar to CG10053-PA cfa
DROSOPHILA_2:1628507_AT dm
DROSGENOME1:141210_AT dm
CHICKEN:GGA.12222.3.S1_A_AT similar to hypothetical protein FLJ38348 gga
MG-U74BV2:108803_F_AT RIKEN cDNA 2310002B06 gene mm
MG-U74BV2:108804_R_AT RIKEN cDNA 2310002B06 gene mm
MOE430B:1431000_AT RIKEN cDNA 2310002B06 gene mm
MOUSE430_2:1431000_AT RIKEN cDNA 2310002B06 gene mm
RAE230B:1384149_AT similar to hypothetical protein FLJ38348 (predicted) rn
RAT230_2:1384149_AT similar to hypothetical protein FLJ38348 (predicted) rn
RG-U34B:RC_AI030821_AT Similar to hypothetical protein FLJ38348 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01582 Hypothetical protein T04H1.5 [Caenorhabditis elegans] ref|NP_506071.1| T04H1.5 [Caenorhabditis elegans] 1.0E-157
blast CAE75428 Hypothetical protein CBG23421 [Caenorhabditis briggsae] 1.0E-135
blast EAL28904 GA10036-PA [Drosophila pseudoobscura] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 3.4E-17
Sequence
Target Sequence 
>C. ELEGANS:178156_AT
ggaagggacttgggcacgaggttgaagcagttcaagaacgcaatgaacgagttgaggctg
taatgcaaaaaatgaaagaacaagcggcaaagcatgaagagctgatcgatgactattcca
aacggcggaagcttgatgccaactcaaagcaattagtcaaagacatcagatcttgtcgaa
aggtgtgcgaagagttggatcatcgaattggaaaaaaagttcccagtgtttcgtggtttt
ggagaagttataaagttgctcaagaggaaactacatcttaccataaaaaagttgaaaaag
aagatgaagaatataagtactcaaatggtttagcagctccagaagatccgaattatgatt
tcacaatgtcaacggaaattttagaagaagcactttccactatcaacaattatcttcgag
atggtcacttctattgtatttggtgcggagccaacttttcctcgccagaagatatgatcg
aacattgtcctgggagcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGGGACTTGGGCACGAGGTTGA 671 529 353 Antisense
GATCGATGACTATTCCAAACGGCGG 624 415 456 Antisense
AACGGCGGAAGCTTGATGCCAACTC 681 141 473 Antisense
TTCCCAGTGTTTCGTGGTTTTGGAG 124 697 572 Antisense
GAGGAAACTACATCTTACCATAAAA 330 403 616 Antisense
GGTTTAGCAGCTCCAGAAGATCCGA 240 505 679 Antisense
AGAAGCACTTTCCACTATCAACAAT 647 73 738 Antisense
GATGGTCACTTCTATTGTATTTGGT 84 409 772 Antisense
ATTTGGTGCGGAGCCAACTTTTCCT 550 15 790 Antisense
CCAACTTTTCCTCGCCAGAAGATAT 102 277 803 Antisense
GATCGAACATTGTCCTGGGAGCACT 193 387 828 Antisense
Sequence Source Affymetrix Proprietary Database