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[178155_at]

Description K03H4.1 /REP_DB=WormBase Gene ID /WP=CE11696 /TR=Q9XVL6 /GB=CAB03161.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 1
(-3)
A 		11
(-1.7)
A 		1.8
(-2.9)
A 		45.5
(3)
A 		45
B 1.1
(-3)
A 		2.1
(-2.6)
A 		2.6
(-2.4)
A 		16.6
(3)
A 		16
C 3.2
(-2.7)
A 		3.4
(-2.7)
A 		1.7
(-3)
A 		32.4
(3)
A 		31
avr 1.8
(-3) 		5.5
(-2.3) 		2
(-3) 		31.5
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.5
(-0.1)
A 		3.5
(-2.5)
A 		14.2
(0.6)
A 		1.6
(-3)
A 		22.4
(3)
A 		2
(-2.9)
A 		21
B 4.3
(-0.3)
A 		4.3
(-0.3)
A 		2.1
(-2.1)
A 		1.5
(-2.6)
A 		8.4
(3)
A 		1
(-3)
A 		7
C 2.3
(-2.9)
A 		10.7
(-0.9)
A 		1.8
(-3)
A 		27.3
(3)
A 		2.1
(-2.9)
A 		18.2
(0.9)
A 		26
avr 6
(-3) 		6.2
(-2.8) 		6
(-3) 		10.1
(1.9) 		11
(3) 		7.1
(-1.7) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.4
(-3)
A 		2.4
(-1.1)
A 		0.5
(-2.9)
A 		6.7
(3)
A 		6
B 0.4
(-3)
A 		0.5
(-2.8)
A 		0.6
(-2.6)
A 		3.5
(3)
A 		3
C 1.1
(-2.4)
A 		1
(-2.5)
A 		0.6
(-3)
A 		5.5
(3)
A 		5
avr 0.6
(-3) 		1.3
(-2.1) 		0.6
(-3) 		5.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.1
(-1.4)
A 		1.2
(-2.3)
A 		3.1
(-0.5)
A 		0.4
(-3)
A 		6.8
(3)
A 		0.5
(-2.9)
A 		6
B 1.5
(-0.8)
A 		1.4
(-1)
A 		0.5
(-2.8)
A 		0.4
(-3)
A 		3.4
(3)
A 		0.4
(-3)
A 		3
C 0.9
(-2.6)
A 		3.3
(-0)
A 		0.5
(-3)
A 		5.5
(2.4)
A 		0.7
(-2.8)
A 		6.1
(3)
A 		6
avr 1.5
(-2.7) 		2
(-1.4) 		1.4
(-3) 		2.1
(-1.1) 		3.6
(3) 		2.3
(-0.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178155_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12938
Sequence Type Exemplar sequence
Representative Public ID K03H4.1 NCBI
Target Description K03H4.1 /REP_DB=WormBase Gene ID /WP=CE11696 /TR=Q9XVL6 /GB=CAB03161.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073872 NCBI Caenorhabditis elegans K03H4.1 (K03H4.1) mRNA, complete cds. 11/11 None
SNAP00000020388 ENSEMBL cdna:SNAP chromosome:CEL140:V:13152862:13155057:1 11/11 None
GENEFINDER00000020393 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13152862:13155057:1 11/11 None
K03H4.1 ENSEMBL cdna:known chromosome:CEL140:V:13153079:13155057:1 gene:K03H4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13153078-13155057(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H4.1
Entrez Gene 3565215 Entrez gene
SwissProt Q9XVL6 EMBL-EBI
WormBase CE11696 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03161 Hypothetical protein K03H4.1 [Caenorhabditis elegans] ref|NP_506273.1| K03H4.1 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:178155_AT
caattccagcagatactcttttgaaaactatcattaaagaagataatcataactttgaag
atttcgcgcatttcatgcaatctcatgaagaaagtatcctttgtggattcaatgctcgaa
actctagagaatgtcgtgaactgatgtacaagaaagtaacacaaaaaataaaaatacttt
ttgagccgaatattggagcaactcagcaaatcgctaagaagattgagttggaacctcaaa
atcgtcaagcccaatatacaactgtacttctgaagaccacaaaaagaaccggagcaggga
acccaagaagcttgccagttatttgtccattttcacagaacgcagtgactcaaataccat
ttcattcacaatttccaatagctcattggcatcttcgtggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCCAGCAGATACTCTTTTGAA 97 179 758 Antisense
GATTTCGCGCATTTCATGCAATCTC 30 429 817 Antisense
ATCCTTTGTGGATTCAATGCTCGAA 309 35 853 Antisense
GGAGCAACTCAGCAAATCGCTAAGA 557 519 952 Antisense
GAACCTCAAAATCGTCAAGCCCAAT 180 345 988 Antisense
GTCAAGCCCAATATACAACTGTACT 352 463 1001 Antisense
GAAGCTTGCCAGTTATTTGTCCATT 414 341 1064 Antisense
ATTTGTCCATTTTCACAGAACGCAG 375 17 1078 Antisense
GAACGCAGTGACTCAAATACCATTT 431 347 1095 Antisense
CATTCACAATTTCCAATAGCTCATT 570 215 1120 Antisense
AATAGCTCATTGGCATCTTCGTGGC 126 173 1134 Antisense
Sequence Source Affymetrix Proprietary Database