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[178153_at]

Description F43D2.3 /REP_DB=WormBase Gene ID /WP=CE10338 /TR=Q9XU58 /GB=CAB05723.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 21      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 37.7
(-0.9)
A 		36
(-1)
A 		16.2
(-3)
A 		76.3
(3)
A 		60
B 28.2
(-0)
A 		40.9
(3)
A 		30.4
(0.5)
A 		15.7
(-3)
A 		25
C 53.8
(1.2)
A 		12.3
(-2.6)
A 		7.5
(-3)
A 		73.9
(3)
A 		66
avr 39.9
(0.5) 		29.7
(-1.1) 		18
(-3) 		55.3
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 15.3
(-2.1)
A 		4.7
(-3)
A 		53
(1.1)
A 		15.1
(-2.1)
A 		75.8
(3)
A 		46.2
(0.5)
A 		71
B 47.7
(0.2)
A 		46
(-0.1)
A 		64.5
(2.5)
A 		25
(-3)
A 		67.9
(3)
A 		35.4
(-1.5)
A 		43
C 8.1
(-3)
A 		45.8
(0.1)
A 		13.2
(-2.6)
A 		30.4
(-1.2)
A 		57.7
(1)
A 		81.7
(3)
A 		74
avr 23.7
(-3) 		32.2
(-1.8) 		43.6
(-0.2) 		23.5
(-3) 		67.1
(3) 		54.4
(1.3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 13.7
(3)
A 		7.8
(-0.7)
A 		4.2
(-3)
A 		11.2
(1.4)
A 		10
B 9
(2)
A 		10.1
(3)
A 		7
(0.2)
A 		3.4
(-3)
A 		7
C 17.8
(3)
A 		3.5
(-2.6)
A 		2.6
(-3)
A 		12.5
(0.9)
A 		15
avr 13.5
(3) 		7.1
(-1.3) 		4.6
(-3) 		9
(-0) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.8
(-2.7)
A 		1.7
(-3)
A 		11.5
(-0.2)
A 		3.8
(-2.4)
A 		22.9
(3)
A 		11.3
(-0.3)
A 		21
B 16.6
(-0.1)
A 		15.3
(-0.5)
A 		15.7
(-0.4)
A 		6.6
(-3)
A 		27.6
(3)
A 		13.2
(-1.1)
A 		21
C 3
(-3)
A 		14
(-0.3)
A 		3.3
(-2.9)
A 		6.1
(-2.2)
A 		18.7
(0.9)
A 		27.4
(3)
A 		24
avr 7.5
(-2.3) 		10.3
(-1.4) 		10.2
(-1.4) 		5.5
(-3) 		23.1
(3) 		17.3
(1) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12973
Sequence Type Exemplar sequence
Representative Public ID F43D2.3 NCBI
Target Description F43D2.3 /REP_DB=WormBase Gene ID /WP=CE10338 /TR=Q9XU58 /GB=CAB05723.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074215(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074215 NCBI Caenorhabditis elegans F43D2.3 (F43D2.3) mRNA, complete cds. 11/11 None
SNAP00000010912 ENSEMBL cdna:SNAP chromosome:CEL140:V:14634876:14635695:1 9/11 None
GENEFINDER00000010922 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14634480:14635695:1 11/11 None
F43D2.3 ENSEMBL cdna:known chromosome:CEL140:V:14634480:14635695:1 gene:F43D2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14634479-14635695(+) 78.62 100.0
Public Domain and Genome References
Gene Title
Ensembl F43D2.3
Entrez Gene 185706 Entrez gene
SwissProt Q9XU58 EMBL-EBI
WormBase CE10338 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05723 Hypothetical protein F43D2.3 [Caenorhabditis elegans] ref|NP_506616.1| F43D2.3 [Caenorhabditis elegans] 1.0E-106
blast CAB05723 Hypothetical protein F43D2.3 [Caenorhabditis elegans] ref|NP_506616.1| F43D2.3 [Caenorhabditis elegans] 3.0E-79
blast AAP13763 Hypothetical protein Y37E11B.10b [Caenorhabditis elegans] ref|NP_001023443.1| Y37E11B.10b [Caenorhabditis elegans] 6.0E-26
blast AAD12819 Hypothetical protein Y37E11B.10a [Caenorhabditis elegans] ref|NP_001023442.1| Y37E11B.10a [Caenorhabditis elegans] 6.0E-26
blast AAP13763 Hypothetical protein Y37E11B.10b [Caenorhabditis elegans] ref|NP_001023443.1| Y37E11B.10b [Caenorhabditis elegans] 1.0E-25
blast AAD12819 Hypothetical protein Y37E11B.10a [Caenorhabditis elegans] ref|NP_001023442.1| Y37E11B.10a [Caenorhabditis elegans] 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:178153_AT
tcttccggacactcctgatgacaaccaaacaaccagcaccaacatgagcccacgccgcag
tgtacgcattcgacggatgcctgttcggtatggttcaactatgcagcccccagcaacatc
caatgggcaaaggaacacgcgaggacagggccctaaaccaaaaggtcgagccgccactcg
caacaaaagtccagacaactcgccacggatgtacagttctggtcaagtggatcgagcatc
aggatcagtgcttccggtcgctcatgataatcgaactttggatcgggattcggcccaaaa
tcaaattgatgctcctcaagtcatgactgccccagttgcgccaactgcaaacaagattgt
cgtttttggcaccacgcctaatggaaagacaatgatccaaatgacaatcgacatgaaggt
cgtggttggtcagttgctcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCGGACACTCCTGATGACAAC 262 617 117 Antisense
AAACAACCAGCACCAACATGAGCCC 484 129 143 Antisense
GCCGCAGTGTACGCATTCGACGGAT 198 285 170 Antisense
GACGGATGCCTGTTCGGTATGGTTC 389 377 188 Antisense
CGGTATGGTTCAACTATGCAGCCCC 319 243 202 Antisense
GCCCCCAGCAACATCCAATGGGCAA 592 285 222 Antisense
AGACAACTCGCCACGGATGTACAGT 554 69 309 Antisense
AGCATCAGGATCAGTGCTTCCGGTC 666 77 351 Antisense
GCTTCCGGTCGCTCATGATAATCGA 313 305 366 Antisense
AAGATTGTCGTTTTTGGCACCACGC 526 155 469 Antisense
GTCGTGGTTGGTCAGTTGCTCAAAG 24 471 535 Antisense
Sequence Source Affymetrix Proprietary Database