[Home] | [Total List]

[178152_at]

Description T26E4.5 /REP_DB=WormBase Gene ID /WP=CE20104 /TR=Q9XVH8 /GB=CAB03440.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 22
(0.8)
A 		9.1
(-3)
A 		11.2
(-2.4)
A 		29.3
(3)
A 		20
B 2.9
(-3)
A 		9.7
(-1.8)
A 		2.7
(-3)
A 		37.3
(3)
A 		35
C 4.2
(-2.9)
A 		8.1
(-2.6)
A 		2.8
(-3)
A 		78.3
(3)
P 		76
avr 9.7
(-2.4) 		9
(-2.5) 		5.6
(-3) 		48.3
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.6
(-2.5)
A 		28.9
(3)
A 		12.7
(-0.8)
A 		4.9
(-2.7)
A 		3.6
(-3)
A 		8.8
(-1.8)
A 		25
B 16.4
(3)
A 		3.2
(-2.7)
A 		12.4
(1.3)
A 		4.6
(-2.1)
A 		2.8
(-2.9)
A 		2.6
(-3)
A 		14
C 3.9
(-2.6)
A 		21.9
(3)
A 		16.8
(1.4)
A 		5
(-2.2)
A 		2.5
(-3)
A 		2.9
(-2.9)
A 		19
avr 8.6
(-0.8) 		18
(3) 		14
(1.4) 		4.8
(-2.3) 		3
(-3) 		4.8
(-2.3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8
(3)
A 		2
(-3)
A 		2.9
(-2.1)
A 		4.3
(-0.7)
A 		6
B 0.9
(-2.8)
A 		2.4
(-1.5)
A 		0.6
(-3)
A 		8
(3)
A 		7
C 1.4
(-2.8)
A 		2.3
(-2.4)
A 		1
(-3)
A 		13.2
(3)
P 		12
avr 3.4
(-1.4) 		2.2
(-2.4) 		1.5
(-3) 		8.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1
(-3)
A 		10.3
(3)
A 		2.8
(-1.8)
A 		1.2
(-2.9)
A 		1.1
(-2.9)
A 		2.1
(-2.3)
A 		9
B 5.7
(3)
A 		1.1
(-2.9)
A 		3
(-0.4)
A 		1.2
(-2.7)
A 		1.1
(-2.9)
A 		1
(-3)
A 		5
C 1.4
(-2.4)
A 		6.7
(3)
A 		4.3
(0.6)
A 		1
(-2.8)
A 		0.8
(-3)
A 		1
(-2.8)
A 		6
avr 2.7
(-1) 		6
(3) 		3.4
(-0.1) 		1.1
(-2.9) 		1
(-3) 		1.4
(-2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13481
Sequence Type Exemplar sequence
Representative Public ID T26E4.5 NCBI
Target Description T26E4.5 /REP_DB=WormBase Gene ID /WP=CE20104 /TR=Q9XVH8 /GB=CAB03440.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074534(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074534 NCBI Caenorhabditis elegans T26E4.5 (T26E4.5) mRNA, complete cds. 11/11 None
SNAP00000017594 ENSEMBL cdna:SNAP chromosome:CEL140:V:15789456:15790712:-1 9/11 None
GENEFINDER00000017607 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15789456:15791418:-1 11/11 None
T26E4.5 ENSEMBL cdna:known chromosome:CEL140:V:15789456:15791418:-1 gene:T26E4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15789455-15791418(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26E4.5
Entrez Gene 188931 Entrez gene
SwissProt Q9XVH8 EMBL-EBI
WormBase CE20104 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03440 Hypothetical protein T26E4.5 [Caenorhabditis elegans] ref|NP_506935.1| T26E4.5 [Caenorhabditis elegans] 0.0
blast CAB03434 Hypothetical protein T26E4.4 [Caenorhabditis elegans] ref|NP_506936.1| T26E4.4 [Caenorhabditis elegans] 1.0E-102
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 1.0E-89
blast CAB03440 Hypothetical protein T26E4.5 [Caenorhabditis elegans] ref|NP_506935.1| T26E4.5 [Caenorhabditis elegans] 2.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506935.1 1 13-35
T26E4.5 1 13-35
GENEFINDER00000017607 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:178152_AT
tccggcctgttattcgtgaattgcttgcaccaagccggccggcaacacttgctgctgaaa
agatattaccatcagaacttaaacaagatttaataatatgcacacacattcgacgtggag
attttcagactgacagagttcataaaccatctgatccaagttttacacgtgctgctacgg
agtttttggtgaaacattaccaaaaattgcacaatcgtacaactgtggtcgtttttggga
atgatgtgaattttgcaaaagcagtttttgaagatcgaattttcaactcttcgcatctac
aagatcgcaccccaactccaccaaactacacaattcctaaaatctcacctgaatattctg
taattcttccacaaaattcaaccccagaaaatgatttggcattttccagacaattttatg
acgttatgcttatcacagcaccatcatcaacttttggatggtggttatcatatttggcaa
accgttcagcagttgtctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGGCCTGTTATTCGTGAATTGCT 33 595 413 Antisense
GTGAATTGCTTGCACCAAGCCGGCC 31 481 428 Antisense
GCCGGCAACACTTGCTGCTGAAAAG 380 283 450 Antisense
TATGCACACACATTCGACGTGGAGA 574 655 509 Antisense
CTGATCCAAGTTTTACACGTGCTGC 545 237 563 Antisense
ACAATCGTACAACTGTGGTCGTTTT 192 115 623 Antisense
TCTTCGCATCTACAAGATCGCACCC 573 617 700 Antisense
CTCCACCAAACTACACAATTCCTAA 617 235 728 Antisense
ACACAATTCCTAAAATCTCACCTGA 361 111 740 Antisense
TGCTTATCACAGCACCATCATCAAC 452 579 839 Antisense
GGCAAACCGTTCAGCAGTTGTCTAT 87 535 888 Antisense
Sequence Source Affymetrix Proprietary Database